Analysis of interatomic Contacts of Structural Units in PDB entry:
8BMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BMS entry

There are 3 chains in PDB entry 8BMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 281
B
 ALA 2LYS 282
C
 LYS 3HIS 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8BMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 54Right-handed alpha
Helix 2
AA2
A
78 84Right-handed alpha
Helix 3
AA3
A
92 96Right-handed 310
Helix 4
AA4
A
101 113Right-handed alpha
Helix 5
AA5
A
116 131Right-handed alpha
Helix 6
AA6
A
133 137Right-handed 310
Helix 7
AA7
A
145 159Right-handed alpha
Helix 8
AA8
A
175 194Right-handed alpha
Helix 9
AA9
A
203 209Right-handed alpha
Helix 10
AB1
A
226 231Right-handed alpha
Helix 11
AB2
A
233 240Right-handed alpha
Helix 12
AB3
A
245 257Right-handed alpha
Helix 13
AB4
A
267 281Right-handed alpha
Helix 14
AB5
B
45 54Right-handed alpha
Helix 15
AB6
B
80 86Right-handed alpha
Helix 16
AB7
B
93 97Right-handed 310
Helix 17
AB8
B
102 114Right-handed alpha
Helix 18
AB9
B
117 132Right-handed alpha
Helix 19
AC1
B
135 141Right-handed 310
Helix 20
AC2
B
147 161Right-handed alpha
Helix 21
AC3
B
177 193Right-handed alpha
Helix 22
AC4
B
204 212Right-handed alpha
Helix 23
AC5
B
228 233Right-handed alpha
Helix 24
AC6
B
235 242Right-handed alpha
Helix 25
AC7
B
247 260Right-handed alpha
Helix 26
AC8
B
269 282Right-handed alpha
Helix 27
AC9
C
14 19Right-handed alpha
Helix 28
AD1
C
20 36Right-handed alpha
Helix 29
AD2
C
40 57Right-handed alpha
Helix 30
AD3
C
61 87Right-handed alpha
Helix 31
AD4
C
102 130Right-handed alpha
Helix 32
AD5
C
131 143Right-handed alpha
Helix 33
AD6
C
144 148Right-handed 310
Helix 34
AD7
C
152 184Right-handed alpha
Helix 35
AD8
C
192 201Right-handed alpha
Helix 36
AD9
C
203 225Right-handed alpha
Helix 37
AE1
C
245 261Right-handed alpha
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There are 4 sheets in PDB entry 8BMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 30first strand
Strand 2
A
4 11anti-parallel
Strand 3
A
66 69anti-parallel
Strand 4
A
72 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
164 168parallel
Strand 3
A
196 200parallel
Strand 4
A
35 40parallel
Strand 5
A
212 217parallel
Strand 6
A
220 225anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 30first strand
Strand 2
B
3 12anti-parallel
Strand 3
B
61 66anti-parallel
Strand 4
B
69 71anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
166 170parallel
Strand 3
B
197 201parallel
Strand 4
B
35 40parallel
Strand 5
B
214 219parallel
Strand 6
B
222 227anti-parallel
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