Analysis of interatomic Contacts of Structural Units in PDB entry:
8BMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BMV entry

There are 2 chains in PDB entry 8BMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 7ALA 251
B
 ARG 7GLN 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8BMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 42Right-handed alpha
Helix 2
AA2
A
42 51Right-handed alpha
Helix 3
AA3
A
54 56Right-handed 310
Helix 4
AA4
A
57 72Right-handed alpha
Helix 5
AA5
A
101 103Right-handed 310
Helix 6
AA6
A
104 114Right-handed alpha
Helix 7
AA7
A
154 164Right-handed alpha
Helix 8
AA8
A
186 190Right-handed 310
Helix 9
AA9
A
194 200Right-handed alpha
Helix 10
AB1
A
200 209Right-handed alpha
Helix 11
AB2
A
247 249Right-handed 310
Helix 12
AB3
B
13 41Right-handed alpha
Helix 13
AB4
B
42 52Right-handed alpha
Helix 14
AB5
B
57 72Right-handed alpha
Helix 15
AB6
B
101 103Right-handed 310
Helix 16
AB7
B
104 114Right-handed alpha
Helix 17
AB8
B
154 164Right-handed alpha
Helix 18
AB9
B
186 190Right-handed 310
Helix 19
AC1
B
194 199Right-handed alpha
Helix 20
AC2
B
200 209Right-handed alpha
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There are 5 sheets in PDB entry 8BMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
86 89anti-parallel
Strand 3
A
76 81anti-parallel
Strand 4
A
143 153anti-parallel
Strand 5
A
130 140anti-parallel
Strand 6
A
117 123anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
171 176anti-parallel
Strand 3
A
238 245anti-parallel
Strand 4
A
224 232anti-parallel
Strand 5
A
215 221anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
249 250parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 96first strand
Strand 2
B
86 89anti-parallel
Strand 3
B
76 81anti-parallel
Strand 4
B
143 153anti-parallel
Strand 5
B
130 140anti-parallel
Strand 6
B
117 123anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 183first strand
Strand 2
B
171 176anti-parallel
Strand 3
B
238 245anti-parallel
Strand 4
B
224 232anti-parallel
Strand 5
B
215 221anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il