Analysis of interatomic Contacts of Structural Units in PDB entry:
8BMW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BMW entry

There are 15 chains in PDB entry 8BMW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 19	VAL 139
B	ASP 19	SER 137
C	ASP 19	LYS 138
D	ASP 19	VAL 139
E	GLN 18	VAL 139
J	PRO 5	GLU 274
L	ILE 2	GLU 202
N	VAL 2	SER 252
R	A 1	U 48
G	MET 4	ILE 244
F	SER 2	THR 246
H	TYR 4	LYS 278
I	TYR 4	LYS 278
K	MET 1	ILE 829
M	ILE 2	LEU 300

There are119 helices in PDB entry 8BMW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	48	61	Right-handed alpha
Helix 3	AA3	A	63	76	Right-handed alpha
Helix 4	AA4	A	80	93	Right-handed alpha
Helix 5	AA5	A	95	117	Right-handed alpha
Helix 6	AA6	A	128	139	Right-handed alpha
Helix 7	AA7	B	20	32	Right-handed alpha
Helix 8	AA8	B	46	61	Right-handed alpha
Helix 9	AA9	B	62	76	Right-handed alpha
Helix 10	AB1	B	80	91	Right-handed alpha
Helix 11	AB2	B	95	117	Right-handed alpha
Helix 12	AB3	B	119	123	Right-handed 310
Helix 13	AB4	B	128	136	Right-handed alpha
Helix 14	AB5	C	20	32	Right-handed alpha
Helix 15	AB6	C	46	61	Right-handed alpha
Helix 16	AB7	C	63	76	Right-handed alpha
Helix 17	AB8	C	80	91	Right-handed alpha
Helix 18	AB9	C	95	117	Right-handed alpha
Helix 19	AC1	C	119	123	Right-handed 310
Helix 20	AC2	C	129	138	Right-handed alpha
Helix 21	AC3	D	20	32	Right-handed alpha
Helix 22	AC4	D	46	61	Right-handed alpha
Helix 23	AC5	D	62	76	Right-handed alpha
Helix 24	AC6	D	80	91	Right-handed alpha
Helix 25	AC7	D	95	117	Right-handed alpha
Helix 26	AC8	D	128	139	Right-handed alpha
Helix 27	AC9	E	19	32	Right-handed alpha
Helix 28	AD1	E	46	60	Right-handed alpha
Helix 29	AD2	E	62	76	Right-handed alpha
Helix 30	AD3	E	80	91	Right-handed alpha
Helix 31	AD4	E	92	94	Right-handed 310
Helix 32	AD5	E	96	117	Right-handed alpha
Helix 33	AD6	E	119	124	Right-handed alpha
Helix 34	AD7	E	128	139	Right-handed alpha
Helix 35	AD8	J	56	62	Right-handed alpha
Helix 36	AD9	J	69	74	Right-handed alpha
Helix 37	AE1	J	92	108	Right-handed alpha
Helix 38	AE2	J	123	130	Right-handed alpha
Helix 39	AE3	J	150	156	Right-handed alpha
Helix 40	AE4	J	206	217	Right-handed alpha
Helix 41	AE5	J	255	266	Right-handed alpha
Helix 42	AE6	L	35	50	Right-handed alpha
Helix 43	AE7	L	62	70	Right-handed alpha
Helix 44	AE8	L	75	82	Right-handed alpha
Helix 45	AE9	L	144	160	Right-handed alpha
Helix 46	AF1	L	176	183	Right-handed alpha
Helix 47	AF2	L	186	198	Right-handed alpha
Helix 48	AF3	N	42	59	Right-handed alpha
Helix 49	AF4	N	60	65	Right-handed alpha
Helix 50	AF5	N	73	84	Right-handed alpha
Helix 51	AF6	N	84	96	Right-handed alpha
Helix 52	AF7	N	111	126	Right-handed alpha
Helix 53	AF8	N	127	134	Right-handed alpha
Helix 54	AF9	N	195	208	Right-handed alpha
Helix 55	AG1	N	215	219	Right-handed 310
Helix 56	AG2	N	247	252	Right-handed alpha
Helix 57	AG3	G	53	73	Right-handed alpha
Helix 58	AG4	G	105	112	Right-handed alpha
Helix 59	AG5	G	185	199	Right-handed alpha
Helix 60	AG6	G	240	244	Right-handed alpha
Helix 61	AG7	F	53	73	Right-handed alpha
Helix 62	AG8	F	105	112	Right-handed alpha
Helix 63	AG9	F	180	200	Right-handed alpha
Helix 64	AH1	F	240	245	Right-handed alpha
Helix 65	AH2	H	58	77	Right-handed alpha
Helix 66	AH3	H	89	94	Right-handed alpha
Helix 67	AH4	H	96	106	Right-handed alpha
Helix 68	AH5	H	107	118	Right-handed alpha
Helix 69	AH6	H	121	126	Right-handed alpha
Helix 70	AH7	H	189	205	Right-handed alpha
Helix 71	AH8	H	253	270	Right-handed alpha
Helix 72	AH9	I	58	77	Right-handed alpha
Helix 73	AI1	I	97	106	Right-handed alpha
Helix 74	AI2	I	107	118	Right-handed alpha
Helix 75	AI3	I	120	127	Right-handed alpha
Helix 76	AI4	I	189	206	Right-handed alpha
Helix 77	AI5	I	253	261	Right-handed alpha
Helix 78	AI6	I	261	270	Right-handed alpha
Helix 79	AI7	K	17	44	Right-handed alpha
Helix 80	AI8	K	47	63	Right-handed alpha
Helix 81	AI9	K	78	90	Right-handed alpha
Helix 82	AJ1	K	101	112	Right-handed alpha
Helix 83	AJ2	K	115	136	Right-handed alpha
Helix 84	AJ3	K	149	165	Right-handed alpha
Helix 85	AJ4	K	171	188	Right-handed alpha
Helix 86	AJ5	K	191	207	Right-handed alpha
Helix 87	AJ6	K	211	224	Right-handed alpha
Helix 88	AJ7	K	230	245	Right-handed alpha
Helix 89	AJ8	K	250	255	Right-handed alpha
Helix 90	AJ9	K	271	283	Right-handed alpha
Helix 91	AK1	K	283	300	Right-handed alpha
Helix 92	AK2	K	323	329	Right-handed alpha
Helix 93	AK3	K	332	364	Right-handed alpha
Helix 94	AK4	K	370	374	Right-handed 310
Helix 95	AK5	K	392	408	Right-handed alpha
Helix 96	AK6	K	430	441	Right-handed alpha
Helix 97	AK7	K	442	446	Right-handed alpha
Helix 98	AK8	K	482	495	Right-handed alpha
Helix 99	AK9	K	496	502	Right-handed alpha
Helix 100	AL1	K	516	521	Right-handed alpha
Helix 101	AL2	K	534	541	Right-handed alpha
Helix 102	AL3	K	560	567	Right-handed alpha
Helix 103	AL4	K	570	598	Right-handed alpha
Helix 104	AL5	K	602	616	Right-handed alpha
Helix 105	AL6	K	633	643	Right-handed alpha
Helix 106	AL7	K	644	649	Right-handed alpha
Helix 107	AL8	K	665	680	Right-handed alpha
Helix 108	AL9	K	701	712	Right-handed alpha
Helix 109	AM1	K	726	736	Right-handed alpha
Helix 110	AM2	K	740	750	Right-handed alpha
Helix 111	AM3	K	750	775	Right-handed alpha
Helix 112	AM4	K	776	790	Right-handed alpha
Helix 113	AM5	K	795	806	Right-handed alpha
Helix 114	AM6	K	815	829	Right-handed alpha
Helix 115	AM7	M	31	47	Right-handed alpha
Helix 116	AM8	M	86	91	Right-handed alpha
Helix 117	AM9	M	100	105	Right-handed alpha
Helix 118	AN1	M	179	185	Right-handed alpha
Helix 119	AN2	M	295	300	Right-handed 310

There are 35 sheets in PDB entry 8BMW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	90	91	first strand
Strand 2	J	170	174	anti-parallel
Strand 3	J	195	205	anti-parallel
Strand 4	J	165	167	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	90	91	first strand
Strand 2	J	170	174	anti-parallel
Strand 3	J	195	205	anti-parallel
Strand 4	J	19	29	anti-parallel
Strand 5	J	244	248	anti-parallel
Strand 6	J	228	229	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	37	40	first strand
Strand 2	J	81	82	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	177	178	first strand
Strand 2	J	189	190	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	91	95	first strand
Strand 2	L	133	140	anti-parallel
Strand 3	L	5	10	anti-parallel
Strand 4	L	169	173	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	102	107	first strand
Strand 2	L	123	128	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	142	144	first strand
Strand 2	N	185	191	anti-parallel
Strand 3	N	3	10	anti-parallel
Strand 4	N	231	235	anti-parallel
Strand 5	N	245	246	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	15	16	first strand
Strand 2	N	176	181	anti-parallel
Strand 3	N	28	29	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	15	16	first strand
Strand 2	N	176	181	anti-parallel
Strand 3	N	154	158	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	122	first strand
Strand 2	G	165	171	anti-parallel
Strand 3	G	11	23	anti-parallel
Strand 4	G	214	226	anti-parallel
Strand 5	G	236	239	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	51	52	first strand
Strand 2	G	125	126	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	137	first strand
Strand 2	G	153	158	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	122	first strand
Strand 2	F	163	171	anti-parallel
Strand 3	F	11	21	anti-parallel
Strand 4	F	215	226	anti-parallel
Strand 5	F	236	239	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	52	first strand
Strand 2	F	125	126	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	91	first strand
Strand 2	F	103	104	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	137	first strand
Strand 2	F	153	158	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	137	first strand
Strand 2	H	178	186	anti-parallel
Strand 3	H	14	24	anti-parallel
Strand 4	H	221	223	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	137	first strand
Strand 2	H	178	186	anti-parallel
Strand 3	H	14	24	anti-parallel
Strand 4	H	226	232	anti-parallel
Strand 5	H	249	252	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	128	first strand
Strand 2	H	131	132	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	147	152	first strand
Strand 2	H	168	173	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	135	137	first strand
Strand 2	I	178	186	anti-parallel
Strand 3	I	141	142	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	135	137	first strand
Strand 2	I	178	186	anti-parallel
Strand 3	I	14	24	anti-parallel
Strand 4	I	221	232	anti-parallel
Strand 5	I	249	250	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	147	151	first strand
Strand 2	I	169	173	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	12	15	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	382	387	first strand
Strand 2	K	311	319	anti-parallel
Strand 3	K	416	424	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	447	448	first strand
Strand 2	M	234	240	anti-parallel
Strand 3	M	270	276	anti-parallel
Strand 4	M	216	220	anti-parallel
Strand 5	M	290	291	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	505	507	first strand
Strand 2	K	513	515	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	625	627	first strand
Strand 2	K	551	558	anti-parallel
Strand 3	K	653	660	anti-parallel
Strand 4	K	689	694	parallel
Strand 5	K	724	725	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	717	718	first strand
Strand 2	K	811	812	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	60	61	first strand
Strand 2	M	172	175	anti-parallel
Strand 3	M	3	6	anti-parallel
Strand 4	M	204	205	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	160	169	anti-parallel
Strand 3	M	140	148	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	64	66	first strand
Strand 2	M	121	126	anti-parallel
Strand 3	M	133	136	anti-parallel
Strand 4	M	80	81	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	227	228	first strand
Strand 2	M	231	232	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	243	244	first strand
Strand 2	M	264	265	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	247	249	first strand
Strand 2	M	258	261	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BMW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BMW