Analysis of interatomic Contacts of Structural Units in PDB entry:
8BMX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BMX entry

There are 2 chains in PDB entry 8BMX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	PRO 45	PRO 682
A	PRO 45	ARG 667

There are 29 helices in PDB entry 8BMX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	69	77	Right-handed alpha
Helix 2	AA2	C	98	100	Right-handed 310
Helix 3	AA3	C	120	124	Right-handed 310
Helix 4	AA4	C	125	129	Right-handed 310
Helix 5	AA5	C	138	141	Right-handed 310
Helix 6	AA6	C	219	223	Right-handed 310
Helix 7	AA7	C	442	445	Right-handed 310
Helix 8	AA8	C	460	466	Right-handed alpha
Helix 9	AA9	C	655	659	Right-handed 310
Helix 10	AB1	A	69	77	Right-handed alpha
Helix 11	AB2	A	98	100	Right-handed 310
Helix 12	AB3	A	125	129	Right-handed 310
Helix 13	AB4	A	138	141	Right-handed 310
Helix 14	AB5	A	219	223	Right-handed 310
Helix 15	AB6	A	460	466	Right-handed alpha
Helix 16	AB7	A	656	659	Right-handed 310
Helix 17	AB8	B	69	77	Right-handed alpha
Helix 18	AB9	B	98	100	Right-handed 310
Helix 19	AC1	B	125	129	Right-handed 310
Helix 20	AC2	B	138	141	Right-handed 310
Helix 21	AC3	B	219	223	Right-handed 310
Helix 22	AC4	B	460	466	Right-handed alpha
Helix 23	AC5	B	656	659	Right-handed 310
Helix 24	AC6	D	78	85	Right-handed alpha
Helix 25	AC7	D	107	109	Right-handed 310
Helix 26	AC8	E	78	85	Right-handed alpha
Helix 27	AC9	E	107	109	Right-handed 310
Helix 28	AD1	F	78	85	Right-handed alpha
Helix 29	AD2	F	107	109	Right-handed 310

There are 49 sheets in PDB entry 8BMX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	82	first strand
Strand 2	C	91	93	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	110	first strand
Strand 2	C	102	106	anti-parallel
Strand 3	C	150	155	parallel
Strand 4	C	131	136	anti-parallel

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There are 22 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	426	427	first strand
Strand 2	C	412	423	anti-parallel
Strand 3	C	396	406	anti-parallel
Strand 4	C	359	373	anti-parallel
Strand 5	C	333	353	anti-parallel
Strand 6	C	306	325	anti-parallel
Strand 7	C	284	303	anti-parallel
Strand 8	C	256	270	anti-parallel
Strand 9	C	239	251	anti-parallel
Strand 10	C	191	202	anti-parallel
Strand 11	C	177	187	anti-parallel
Strand 12	C	167	173	anti-parallel
Strand 13	C	673	681	anti-parallel
Strand 14	C	646	654	anti-parallel
Strand 15	C	629	641	anti-parallel
Strand 16	C	600	609	anti-parallel
Strand 17	C	587	597	anti-parallel
Strand 18	C	552	560	anti-parallel
Strand 19	C	536	544	anti-parallel
Strand 20	C	496	502	anti-parallel
Strand 21	C	477	490	anti-parallel
Strand 22	C	507	509	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	426	427	first strand
Strand 2	C	412	423	anti-parallel
Strand 3	C	431	441	anti-parallel
Strand 4	C	446	457	anti-parallel
Strand 5	C	477	490	anti-parallel
Strand 6	C	507	509	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	209	first strand
Strand 2	C	231	233	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	217	first strand
Strand 2	C	226	228	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	380	first strand
Strand 2	C	386	388	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	512	517	first strand
Strand 2	C	523	529	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	531	532	first strand
Strand 2	C	564	565	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	662	664	first strand
Strand 2	C	667	668	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	91	93	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	102	106	anti-parallel
Strand 3	A	150	155	parallel
Strand 4	A	131	136	anti-parallel

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There are 22 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	427	first strand
Strand 2	A	412	423	anti-parallel
Strand 3	A	396	406	anti-parallel
Strand 4	A	359	373	anti-parallel
Strand 5	A	333	353	anti-parallel
Strand 6	A	310	325	anti-parallel
Strand 7	A	285	301	anti-parallel
Strand 8	A	256	270	anti-parallel
Strand 9	A	239	251	anti-parallel
Strand 10	A	191	202	anti-parallel
Strand 11	A	177	186	anti-parallel
Strand 12	A	167	173	anti-parallel
Strand 13	A	673	680	anti-parallel
Strand 14	A	646	654	anti-parallel
Strand 15	A	629	641	anti-parallel
Strand 16	A	600	609	anti-parallel
Strand 17	A	587	597	anti-parallel
Strand 18	A	552	560	anti-parallel
Strand 19	A	536	542	anti-parallel
Strand 20	A	498	502	anti-parallel
Strand 21	A	477	490	anti-parallel
Strand 22	A	507	509	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	427	first strand
Strand 2	A	412	423	anti-parallel
Strand 3	A	431	441	anti-parallel
Strand 4	A	446	457	anti-parallel
Strand 5	A	477	490	anti-parallel
Strand 6	A	507	509	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	209	first strand
Strand 2	A	231	233	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	217	first strand
Strand 2	A	226	228	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	380	first strand
Strand 2	A	386	388	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	517	first strand
Strand 2	A	523	529	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	531	532	first strand
Strand 2	A	564	565	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	91	93	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	102	106	anti-parallel
Strand 3	B	150	155	parallel
Strand 4	B	131	136	anti-parallel

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There are 22 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	427	first strand
Strand 2	B	412	423	anti-parallel
Strand 3	B	396	406	anti-parallel
Strand 4	B	359	373	anti-parallel
Strand 5	B	333	353	anti-parallel
Strand 6	B	306	325	anti-parallel
Strand 7	B	285	303	anti-parallel
Strand 8	B	256	270	anti-parallel
Strand 9	B	239	251	anti-parallel
Strand 10	B	191	202	anti-parallel
Strand 11	B	178	184	anti-parallel
Strand 12	B	167	172	anti-parallel
Strand 13	B	673	680	anti-parallel
Strand 14	B	647	654	anti-parallel
Strand 15	B	629	640	anti-parallel
Strand 16	B	600	609	anti-parallel
Strand 17	B	587	597	anti-parallel
Strand 18	B	552	560	anti-parallel
Strand 19	B	536	542	anti-parallel
Strand 20	B	498	502	anti-parallel
Strand 21	B	477	490	anti-parallel
Strand 22	B	507	509	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	427	first strand
Strand 2	B	412	423	anti-parallel
Strand 3	B	431	441	anti-parallel
Strand 4	B	446	457	anti-parallel
Strand 5	B	477	490	anti-parallel
Strand 6	B	507	509	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	209	first strand
Strand 2	B	231	233	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	217	first strand
Strand 2	B	226	228	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	380	first strand
Strand 2	B	386	388	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	517	first strand
Strand 2	B	523	529	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	532	first strand
Strand 2	B	564	565	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	76	first strand
Strand 2	D	64	69	anti-parallel
Strand 3	D	50	54	anti-parallel
Strand 4	D	360	365	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	97	first strand
Strand 2	D	101	106	anti-parallel
Strand 3	D	111	116	anti-parallel
Strand 4	D	122	127	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	139	first strand
Strand 2	D	142	147	anti-parallel
Strand 3	D	152	156	anti-parallel
Strand 4	D	163	168	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	185	first strand
Strand 2	D	188	193	anti-parallel
Strand 3	D	199	204	anti-parallel
Strand 4	D	210	215	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	225	first strand
Strand 2	D	230	235	anti-parallel
Strand 3	D	250	255	anti-parallel
Strand 4	D	260	266	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	278	first strand
Strand 2	D	284	288	anti-parallel
Strand 3	D	292	296	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	315	320	first strand
Strand 2	D	327	331	anti-parallel
Strand 3	D	340	344	anti-parallel
Strand 4	D	350	355	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	76	first strand
Strand 2	E	64	69	anti-parallel
Strand 3	E	50	54	anti-parallel
Strand 4	E	360	365	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	97	first strand
Strand 2	E	101	106	anti-parallel
Strand 3	E	111	116	anti-parallel
Strand 4	E	122	127	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	139	first strand
Strand 2	E	142	147	anti-parallel
Strand 3	E	152	156	anti-parallel
Strand 4	E	163	168	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	182	185	first strand
Strand 2	E	188	193	anti-parallel
Strand 3	E	199	204	anti-parallel
Strand 4	E	210	215	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	224	225	first strand
Strand 2	E	230	235	anti-parallel
Strand 3	E	250	255	anti-parallel
Strand 4	E	260	266	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	277	278	first strand
Strand 2	E	284	288	anti-parallel
Strand 3	E	292	296	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	315	320	first strand
Strand 2	E	327	331	anti-parallel
Strand 3	E	340	344	anti-parallel
Strand 4	E	350	355	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	76	first strand
Strand 2	F	64	69	anti-parallel
Strand 3	F	50	54	anti-parallel
Strand 4	F	360	365	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	97	first strand
Strand 2	F	101	106	anti-parallel
Strand 3	F	111	116	anti-parallel
Strand 4	F	122	127	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	139	first strand
Strand 2	F	142	147	anti-parallel
Strand 3	F	152	156	anti-parallel
Strand 4	F	163	168	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	182	185	first strand
Strand 2	F	188	193	anti-parallel
Strand 3	F	199	204	anti-parallel
Strand 4	F	210	215	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	224	225	first strand
Strand 2	F	230	235	anti-parallel
Strand 3	F	250	255	anti-parallel
Strand 4	F	260	266	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	277	278	first strand
Strand 2	F	284	288	anti-parallel
Strand 3	F	292	296	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	315	320	first strand
Strand 2	F	327	331	anti-parallel
Strand 3	F	340	344	anti-parallel
Strand 4	F	350	355	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BMX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BMX