Analysis of interatomic Contacts of Structural Units in PDB entry:
8BMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BMY entry

There are 2 chains in PDB entry 8BMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 40HIS 373
B
 MET 40VAL 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 8BMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
78 85Right-handed alpha
Helix 2
AA2
B
78 85Right-handed alpha
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There are 14 sheets in PDB entry 8BMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
64 69anti-parallel
Strand 3
A
49 54anti-parallel
Strand 4
A
360 366anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 98first strand
Strand 2
A
101 106anti-parallel
Strand 3
A
111 116anti-parallel
Strand 4
A
122 127anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 139first strand
Strand 2
A
142 147anti-parallel
Strand 3
A
152 157anti-parallel
Strand 4
A
162 168anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
188 193anti-parallel
Strand 3
A
199 204anti-parallel
Strand 4
A
209 215anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
230 234anti-parallel
Strand 3
A
250 255anti-parallel
Strand 4
A
260 266anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 278first strand
Strand 2
A
284 288anti-parallel
Strand 3
A
292 296anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 320first strand
Strand 2
A
327 331anti-parallel
Strand 3
A
340 344anti-parallel
Strand 4
A
350 355anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
64 69anti-parallel
Strand 3
B
49 54anti-parallel
Strand 4
B
360 366anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 98first strand
Strand 2
B
101 106anti-parallel
Strand 3
B
111 116anti-parallel
Strand 4
B
122 127anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 139first strand
Strand 2
B
142 147anti-parallel
Strand 3
B
152 157anti-parallel
Strand 4
B
162 168anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 185first strand
Strand 2
B
188 193anti-parallel
Strand 3
B
199 204anti-parallel
Strand 4
B
209 215anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
230 234anti-parallel
Strand 3
B
250 255anti-parallel
Strand 4
B
260 266anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 278first strand
Strand 2
B
284 288anti-parallel
Strand 3
B
292 296anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 320first strand
Strand 2
B
327 331anti-parallel
Strand 3
B
340 344anti-parallel
Strand 4
B
350 355anti-parallel
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