Analysis of interatomic Contacts of Structural Units in PDB entry:
8BN5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BN5 entry

There are 2 chains in PDB entry 8BN5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 436THR 814
B
 LEU 437ALA 817
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8BN5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
465 479Right-handed alpha
Helix 2
AA2
A
502 510Right-handed alpha
Helix 3
AA3
A
523 528Right-handed alpha
Helix 4
AA4
A
667 673Right-handed alpha
Helix 5
AA5
A
685 696Right-handed alpha
Helix 6
AA6
A
703 713Right-handed alpha
Helix 7
AA7
A
714 718Right-handed 310
Helix 8
AA8
A
724 735Right-handed alpha
Helix 9
AA9
A
743 752Right-handed alpha
Helix 10
AB1
A
780 794Right-handed alpha
Helix 11
AB2
A
795 805Right-handed alpha
Helix 12
AB3
B
465 479Right-handed alpha
Helix 13
AB4
B
502 510Right-handed alpha
Helix 14
AB5
B
523 530Right-handed alpha
Helix 15
AB6
B
667 673Right-handed alpha
Helix 16
AB7
B
685 697Right-handed alpha
Helix 17
AB8
B
703 713Right-handed alpha
Helix 18
AB9
B
714 718Right-handed 310
Helix 19
AC1
B
724 735Right-handed alpha
Helix 20
AC2
B
743 752Right-handed alpha
Helix 21
AC3
B
780 794Right-handed alpha
Helix 22
AC4
B
795 805Right-handed alpha
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There are 9 sheets in PDB entry 8BN5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 486first strand
Strand 2
A
438 443parallel
Strand 3
A
515 516parallel
Strand 4
A
773 774anti-parallel
Strand 5
A
531 532anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 454first strand
Strand 2
A
462 464anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 539first strand
Strand 2
A
768 770anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
678 680first strand
Strand 2
A
737 742parallel
Strand 3
A
541 546anti-parallel
Strand 4
A
758 761anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
481 486first strand
Strand 2
B
438 443parallel
Strand 3
B
515 516parallel
Strand 4
B
773 774anti-parallel
Strand 5
B
531 532anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
451 453first strand
Strand 2
B
462 464anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
495 497first strand
Strand 2
B
500 501anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
537 539first strand
Strand 2
B
768 770anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
679 680first strand
Strand 2
B
738 742parallel
Strand 3
B
541 546anti-parallel
Strand 4
B
758 761anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il