Analysis of interatomic Contacts of Structural Units in PDB entry:
8BNS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BNS entry

There are 3 chains in PDB entry 8BNS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 433
B	MET 1	LYS 433
C	MET 1	SER 354

There are 68 helices in PDB entry 8BNS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	20	Right-handed alpha
Helix 2	AA2	A	34	45	Right-handed alpha
Helix 3	AA3	A	56	64	Right-handed alpha
Helix 4	AA4	A	81	86	Right-handed 310
Helix 5	AA5	A	105	108	Right-handed 310
Helix 6	AA6	A	109	124	Right-handed alpha
Helix 7	AA7	A	129	134	Right-handed 310
Helix 8	AA8	A	150	161	Right-handed alpha
Helix 9	AA9	A	165	168	Right-handed 310
Helix 10	AB1	A	169	175	Right-handed alpha
Helix 11	AB2	A	192	202	Right-handed alpha
Helix 12	AB3	A	206	212	Right-handed alpha
Helix 13	AB4	A	213	217	Right-handed 310
Helix 14	AB5	A	235	248	Right-handed alpha
Helix 15	AB6	A	391	399	Right-handed alpha
Helix 16	AB7	A	422	432	Right-handed alpha
Helix 17	AB8	B	8	20	Right-handed alpha
Helix 18	AB9	B	34	45	Right-handed alpha
Helix 19	AC1	B	56	63	Right-handed alpha
Helix 20	AC2	B	68	73	Right-handed alpha
Helix 21	AC3	B	81	86	Right-handed 310
Helix 22	AC4	B	105	108	Right-handed 310
Helix 23	AC5	B	109	124	Right-handed alpha
Helix 24	AC6	B	130	134	Right-handed 310
Helix 25	AC7	B	150	161	Right-handed alpha
Helix 26	AC8	B	165	168	Right-handed 310
Helix 27	AC9	B	169	174	Right-handed alpha
Helix 28	AD1	B	190	202	Right-handed alpha
Helix 29	AD2	B	206	214	Right-handed alpha
Helix 30	AD3	B	215	217	Right-handed 310
Helix 31	AD4	B	235	250	Right-handed alpha
Helix 32	AD5	B	391	399	Right-handed alpha
Helix 33	AD6	B	422	432	Right-handed alpha
Helix 34	AD7	C	8	20	Right-handed alpha
Helix 35	AD8	C	34	45	Right-handed alpha
Helix 36	AD9	C	56	63	Right-handed alpha
Helix 37	AE1	C	68	72	Right-handed alpha
Helix 38	AE2	C	81	86	Right-handed 310
Helix 39	AE3	C	104	108	Right-handed 310
Helix 40	AE4	C	109	124	Right-handed alpha
Helix 41	AE5	C	129	134	Right-handed 310
Helix 42	AE6	C	150	161	Right-handed alpha
Helix 43	AE7	C	165	168	Right-handed 310
Helix 44	AE8	C	169	174	Right-handed alpha
Helix 45	AE9	C	191	202	Right-handed alpha
Helix 46	AF1	C	207	212	Right-handed alpha
Helix 47	AF2	C	213	217	Right-handed 310
Helix 48	AF3	C	235	246	Right-handed alpha
Helix 49	AF4	C	369	372	Right-handed 310
Helix 50	AF5	C	391	399	Right-handed alpha
Helix 51	AF6	C	402	404	Right-handed 310
Helix 52	AF7	C	420	431	Right-handed alpha
Helix 53	AF8	D	8	20	Right-handed alpha
Helix 54	AF9	D	34	45	Right-handed alpha
Helix 55	AG1	D	56	63	Right-handed alpha
Helix 56	AG2	D	68	72	Right-handed alpha
Helix 57	AG3	D	79	84	Right-handed alpha
Helix 58	AG4	D	105	108	Right-handed 310
Helix 59	AG5	D	109	124	Right-handed alpha
Helix 60	AG6	D	129	134	Right-handed 310
Helix 61	AG7	D	150	161	Right-handed alpha
Helix 62	AG8	D	165	169	Right-handed 310
Helix 63	AG9	D	192	202	Right-handed alpha
Helix 64	AH1	D	206	218	Right-handed alpha
Helix 65	AH2	D	235	250	Right-handed alpha
Helix 66	AH3	D	391	399	Right-handed alpha
Helix 67	AH4	D	402	404	Right-handed 310
Helix 68	AH5	D	422	431	Right-handed alpha

There are 22 sheets in PDB entry 8BNS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	53	first strand
Strand 2	A	99	103	parallel
Strand 3	A	135	140	parallel
Strand 4	A	24	28	parallel
Strand 5	A	177	181	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	367	first strand
Strand 2	A	230	233	parallel
Strand 3	A	379	381	parallel
Strand 4	A	406	408	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	258	first strand
Strand 2	A	275	279	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	262	first strand
Strand 2	A	346	357	anti-parallel
Strand 3	A	331	341	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	328	first strand
Strand 2	A	316	320	anti-parallel
Strand 3	A	300	303	anti-parallel
Strand 4	A	283	286	anti-parallel
Strand 5	A	360	362	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	50	54	parallel
Strand 3	B	99	103	parallel
Strand 4	B	135	140	parallel
Strand 5	B	24	28	parallel
Strand 6	B	177	181	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	367	first strand
Strand 2	B	230	233	parallel
Strand 3	B	379	381	parallel
Strand 4	B	406	408	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	258	first strand
Strand 2	B	275	279	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	263	first strand
Strand 2	B	346	357	anti-parallel
Strand 3	B	331	341	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	301	303	anti-parallel
Strand 3	B	316	320	anti-parallel
Strand 4	B	326	328	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	50	54	parallel
Strand 3	C	99	102	parallel
Strand 4	C	135	140	parallel
Strand 5	C	25	28	parallel
Strand 6	C	178	181	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	367	first strand
Strand 2	C	230	233	parallel
Strand 3	C	379	381	parallel
Strand 4	C	406	408	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	258	first strand
Strand 2	C	275	279	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	263	first strand
Strand 2	C	346	357	anti-parallel
Strand 3	C	331	341	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	284	first strand
Strand 2	C	301	302	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	318	first strand
Strand 2	C	326	328	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	50	54	parallel
Strand 3	D	99	103	parallel
Strand 4	D	135	139	parallel
Strand 5	D	24	27	parallel
Strand 6	D	177	178	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	367	first strand
Strand 2	D	230	233	parallel
Strand 3	D	379	381	parallel
Strand 4	D	406	408	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	258	first strand
Strand 2	D	275	279	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	263	first strand
Strand 2	D	346	357	anti-parallel
Strand 3	D	331	341	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	284	first strand
Strand 2	D	301	303	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	319	first strand
Strand 2	D	325	328	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BNS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BNS