Analysis of interatomic Contacts of Structural Units in PDB entry:
8BNU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BNU entry

There are 3 chains in PDB entry 8BNU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 436
B	MET 1	GLU 436
C	MET 1	GLY 492

There are103 helices in PDB entry 8BNU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	50	Right-handed alpha
Helix 2	AA2	A	75	84	Right-handed alpha
Helix 3	AA3	A	97	99	Right-handed 310
Helix 4	AA4	A	100	115	Right-handed alpha
Helix 5	AA5	A	138	150	Right-handed alpha
Helix 6	AA6	A	152	161	Right-handed alpha
Helix 7	AA7	A	185	196	Right-handed alpha
Helix 8	AA8	A	204	211	Right-handed alpha
Helix 9	AA9	A	213	220	Right-handed alpha
Helix 10	AB1	A	287	293	Right-handed alpha
Helix 11	AB2	A	317	331	Right-handed alpha
Helix 12	AB3	A	349	358	Right-handed alpha
Helix 13	AB4	A	359	366	Right-handed alpha
Helix 14	AB5	A	386	391	Right-handed alpha
Helix 15	AB6	A	396	413	Right-handed alpha
Helix 16	AB7	B	36	53	Right-handed alpha
Helix 17	AB8	B	75	84	Right-handed alpha
Helix 18	AB9	B	97	99	Right-handed 310
Helix 19	AC1	B	100	116	Right-handed alpha
Helix 20	AC2	B	137	150	Right-handed alpha
Helix 21	AC3	B	152	161	Right-handed alpha
Helix 22	AC4	B	183	196	Right-handed alpha
Helix 23	AC5	B	198	220	Right-handed alpha
Helix 24	AC6	B	249	254	Right-handed alpha
Helix 25	AC7	B	287	293	Right-handed alpha
Helix 26	AC8	B	317	331	Right-handed alpha
Helix 27	AC9	B	333	337	Right-handed 310
Helix 28	AD1	B	346	358	Right-handed alpha
Helix 29	AD2	B	359	366	Right-handed alpha
Helix 30	AD3	B	396	412	Right-handed alpha
Helix 31	AD4	C	32	48	Right-handed alpha
Helix 32	AD5	C	73	77	Right-handed 310
Helix 33	AD6	C	79	99	Right-handed alpha
Helix 34	AD7	C	115	123	Right-handed alpha
Helix 35	AD8	C	140	144	Right-handed 310
Helix 36	AD9	C	150	159	Right-handed alpha
Helix 37	AE1	C	160	170	Right-handed alpha
Helix 38	AE2	C	175	183	Right-handed alpha
Helix 39	AE3	C	190	192	Right-handed 310
Helix 40	AE4	C	193	204	Right-handed alpha
Helix 41	AE5	C	216	220	Right-handed 310
Helix 42	AE6	C	224	241	Right-handed alpha
Helix 43	AE7	C	247	261	Right-handed alpha
Helix 44	AE8	C	261	277	Right-handed alpha
Helix 45	AE9	C	279	298	Right-handed alpha
Helix 46	AF1	C	317	330	Right-handed alpha
Helix 47	AF2	C	341	362	Right-handed alpha
Helix 48	AF3	C	366	375	Right-handed alpha
Helix 49	AF4	C	399	413	Right-handed alpha
Helix 50	AF5	C	428	434	Right-handed alpha
Helix 51	AF6	C	438	440	Right-handed 310
Helix 52	AF7	C	466	480	Right-handed alpha
Helix 53	AF8	C	494	512	Right-handed alpha
Helix 54	AF9	C	515	526	Right-handed alpha
Helix 55	AG1	C	531	540	Right-handed alpha
Helix 56	AG2	C	540	545	Right-handed alpha
Helix 57	AG3	C	547	556	Right-handed alpha
Helix 58	AG4	C	557	560	Right-handed 310
Helix 59	AG5	C	566	571	Right-handed alpha
Helix 60	AG6	C	600	605	Right-handed alpha
Helix 61	AG7	C	614	636	Right-handed alpha
Helix 62	AG8	C	641	652	Right-handed alpha
Helix 63	AG9	C	656	660	Right-handed 310
Helix 64	AH1	C	661	670	Right-handed alpha
Helix 65	AH2	C	671	686	Right-handed alpha
Helix 66	AH3	C	687	690	Right-handed 310
Helix 67	AH4	C	692	702	Right-handed alpha
Helix 68	AH5	D	32	49	Right-handed alpha
Helix 69	AH6	D	70	76	Right-handed alpha
Helix 70	AH7	D	79	99	Right-handed alpha
Helix 71	AH8	D	115	122	Right-handed alpha
Helix 72	AH9	D	153	160	Right-handed alpha
Helix 73	AI1	D	160	171	Right-handed alpha
Helix 74	AI2	D	175	183	Right-handed alpha
Helix 75	AI3	D	193	204	Right-handed alpha
Helix 76	AI4	D	216	220	Right-handed 310
Helix 77	AI5	D	224	241	Right-handed alpha
Helix 78	AI6	D	247	261	Right-handed alpha
Helix 79	AI7	D	261	277	Right-handed alpha
Helix 80	AI8	D	279	298	Right-handed alpha
Helix 81	AI9	D	318	330	Right-handed alpha
Helix 82	AJ1	D	341	356	Right-handed alpha
Helix 83	AJ2	D	357	362	Right-handed alpha
Helix 84	AJ3	D	366	375	Right-handed alpha
Helix 85	AJ4	D	399	413	Right-handed alpha
Helix 86	AJ5	D	428	434	Right-handed alpha
Helix 87	AJ6	D	438	440	Right-handed 310
Helix 88	AJ7	D	466	480	Right-handed alpha
Helix 89	AJ8	D	494	512	Right-handed alpha
Helix 90	AJ9	D	515	527	Right-handed alpha
Helix 91	AK1	D	531	540	Right-handed alpha
Helix 92	AK2	D	540	546	Right-handed alpha
Helix 93	AK3	D	546	555	Right-handed alpha
Helix 94	AK4	D	565	571	Right-handed alpha
Helix 95	AK5	D	575	580	Right-handed alpha
Helix 96	AK6	D	600	605	Right-handed alpha
Helix 97	AK7	D	614	636	Right-handed alpha
Helix 98	AK8	D	641	652	Right-handed alpha
Helix 99	AK9	D	656	660	Right-handed 310
Helix 100	AL1	D	661	669	Right-handed alpha
Helix 101	AL2	D	671	686	Right-handed alpha
Helix 102	AL3	D	687	690	Right-handed 310
Helix 103	AL4	D	692	702	Right-handed alpha

There are 15 sheets in PDB entry 8BNU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	22	first strand
Strand 2	A	276	286	anti-parallel
Strand 3	A	26	27	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	22	first strand
Strand 2	A	276	286	anti-parallel
Strand 3	A	120	128	anti-parallel
Strand 4	A	62	65	parallel
Strand 5	A	93	96	parallel
Strand 6	B	94	96	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	308	first strand
Strand 2	A	427	434	anti-parallel
Strand 3	A	416	423	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	22	first strand
Strand 2	B	276	286	anti-parallel
Strand 3	B	26	27	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	22	first strand
Strand 2	B	276	286	anti-parallel
Strand 3	B	120	127	anti-parallel
Strand 4	B	62	65	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	308	first strand
Strand 2	B	427	433	anti-parallel
Strand 3	B	417	423	anti-parallel
Strand 4	B	341	342	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	16	19	anti-parallel
Strand 3	C	54	57	parallel
Strand 4	C	103	108	parallel
Strand 5	C	125	129	parallel
Strand 6	C	187	189	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	68	69	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	111	113	parallel
Strand 3	C	135	137	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	377	379	first strand
Strand 2	C	335	337	parallel
Strand 3	C	311	314	parallel
Strand 4	C	391	394	parallel
Strand 5	C	419	422	parallel
Strand 6	C	442	446	parallel
Strand 7	C	458	460	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	584	585	first strand
Strand 2	C	596	597	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	11	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	54	58	parallel
Strand 4	D	103	108	parallel
Strand 5	D	125	129	parallel
Strand 6	D	187	189	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	D	68	69	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	113	first strand
Strand 2	D	136	137	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	377	380	first strand
Strand 2	D	335	338	parallel
Strand 3	D	311	314	parallel
Strand 4	D	391	394	parallel
Strand 5	D	419	423	parallel
Strand 6	D	442	446	parallel
Strand 7	D	456	459	anti-parallel
Strand 8	D	483	486	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BNU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BNU