Analysis of interatomic Contacts of Structural Units in PDB entry:
8BNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BNV entry

There is 1 chain in PDB entry 8BNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20LEU 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8BNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 44Right-handed alpha
Helix 2
AA2
A
54 62Right-handed alpha
Helix 3
AA3
A
66 71Right-handed alpha
Helix 4
AA4
A
77 81Right-handed 310
Helix 5
AA5
A
90 95Right-handed 310
Helix 6
AA6
A
103 106Right-handed 310
Helix 7
AA7
A
107 122Right-handed alpha
Helix 8
AA8
A
126 131Right-handed 310
Helix 9
AA9
A
162 165Right-handed 310
Helix 10
AB1
A
166 171Right-handed alpha
Helix 11
AB2
A
178 182Right-handed 310
Helix 12
AB3
A
191 199Right-handed alpha
Helix 13
AB4
A
203 207Right-handed 310
Helix 14
AB5
A
210 214Right-handed 310
Helix 15
AB6
A
230 245Right-handed alpha
Helix 16
AB7
A
383 390Right-handed alpha
Helix 17
AB8
A
394 396Right-handed 310
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There are 5 sheets in PDB entry 8BNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
48 52parallel
Strand 3
A
97 101parallel
Strand 4
A
132 137parallel
Strand 5
A
22 26parallel
Strand 6
A
174 177parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
225 228parallel
Strand 3
A
371 373parallel
Strand 4
A
398 400parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 253first strand
Strand 2
A
270 274anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 258first strand
Strand 2
A
338 349anti-parallel
Strand 3
A
323 333anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 320first strand
Strand 2
A
307 312anti-parallel
Strand 3
A
295 302anti-parallel
Strand 4
A
278 281anti-parallel
Strand 5
A
352 354anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il