Analysis of interatomic Contacts of Structural Units in PDB entry:
8BNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BNW entry

There is 1 chain in PDB entry 8BNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 20GLU 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8BNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 54Right-handed alpha
Helix 2
AA2
A
62 66Right-handed 310
Helix 3
AA3
A
67 75Right-handed 310
Helix 4
AA4
A
88 96Right-handed alpha
Helix 5
AA5
A
103 108Right-handed 310
Helix 6
AA6
A
109 115Right-handed alpha
Helix 7
AA7
A
128 145Right-handed alpha
Helix 8
AA8
A
146 169Right-handed alpha
Helix 9
AA9
A
195 200Right-handed alpha
Helix 10
AB1
A
220 228Right-handed alpha
Helix 11
AB2
A
237 242Right-handed alpha
Helix 12
AB3
A
246 252Right-handed alpha
Helix 13
AB4
A
253 258Right-handed alpha
Helix 14
AB5
A
259 264Right-handed alpha
Helix 15
AB6
A
271 276Right-handed alpha
Helix 16
AB7
A
281 295Right-handed alpha
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There are 5 sheets in PDB entry 8BNW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 26first strand
Strand 2
A
29 34anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
99 102parallel
Strand 3
A
119 121parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
79 80parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
174 181parallel
Strand 3
A
184 188anti-parallel
Strand 4
A
217 219anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
174 181parallel
Strand 3
A
231 236parallel
Strand 4
A
267 270parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il