Analysis of interatomic Contacts of Structural Units in PDB entry:
8BNX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BNX entry

There are 2 chains in PDB entry 8BNX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	GLN 423
B	ASN 6	GLN 423

There are 33 helices in PDB entry 8BNX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	18	Right-handed alpha
Helix 2	AA2	A	32	42	Right-handed alpha
Helix 3	AA3	A	54	62	Right-handed alpha
Helix 4	AA4	A	66	71	Right-handed alpha
Helix 5	AA5	A	88	95	Right-handed 310
Helix 6	AA6	A	102	106	Right-handed 310
Helix 7	AA7	A	107	122	Right-handed alpha
Helix 8	AA8	A	126	131	Right-handed 310
Helix 9	AA9	A	162	166	Right-handed 310
Helix 10	AB1	A	168	172	Right-handed 310
Helix 11	AB2	A	187	200	Right-handed alpha
Helix 12	AB3	A	203	212	Right-handed alpha
Helix 13	AB4	A	230	244	Right-handed alpha
Helix 14	AB5	A	261	265	Right-handed 310
Helix 15	AB6	A	383	391	Right-handed alpha
Helix 16	AB7	A	394	396	Right-handed 310
Helix 17	AB8	A	411	420	Right-handed alpha
Helix 18	AB9	B	7	18	Right-handed alpha
Helix 19	AC1	B	30	42	Right-handed alpha
Helix 20	AC2	B	54	62	Right-handed alpha
Helix 21	AC3	B	66	71	Right-handed alpha
Helix 22	AC4	B	88	93	Right-handed alpha
Helix 23	AC5	B	102	106	Right-handed 310
Helix 24	AC6	B	107	122	Right-handed alpha
Helix 25	AC7	B	126	131	Right-handed 310
Helix 26	AC8	B	162	172	Right-handed 310
Helix 27	AC9	B	189	200	Right-handed alpha
Helix 28	AD1	B	203	212	Right-handed alpha
Helix 29	AD2	B	230	244	Right-handed alpha
Helix 30	AD3	B	261	265	Right-handed 310
Helix 31	AD4	B	383	390	Right-handed alpha
Helix 32	AD5	B	394	396	Right-handed 310
Helix 33	AD6	B	411	420	Right-handed alpha

There are 11 sheets in PDB entry 8BNX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	50	52	parallel
Strand 3	A	98	100	parallel
Strand 4	A	133	135	parallel
Strand 5	A	23	27	parallel
Strand 6	A	177	179	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	359	first strand
Strand 2	A	225	228	parallel
Strand 3	A	371	373	parallel
Strand 4	A	398	400	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	270	273	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	258	first strand
Strand 2	A	342	349	anti-parallel
Strand 3	A	323	329	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	320	first strand
Strand 2	A	307	311	anti-parallel
Strand 3	A	295	302	anti-parallel
Strand 4	A	278	281	anti-parallel
Strand 5	A	352	354	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	132	135	parallel
Strand 3	B	97	100	parallel
Strand 4	B	50	52	parallel
Strand 5	B	64	65	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	178	179	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	359	first strand
Strand 2	B	225	228	parallel
Strand 3	B	371	373	parallel
Strand 4	B	398	400	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	253	first strand
Strand 2	B	270	274	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	258	first strand
Strand 2	B	340	349	anti-parallel
Strand 3	B	323	331	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	320	first strand
Strand 2	B	307	312	anti-parallel
Strand 3	B	295	302	anti-parallel
Strand 4	B	278	281	anti-parallel
Strand 5	B	352	354	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BNX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BNX