Analysis of interatomic Contacts of Structural Units in PDB entry:
8BNZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BNZ entry

There are 6 chains in PDB entry 8BNZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 24	LYS 808
B	GLU 26	ARG 392
C	SER 29	PRO 85
D	PRO 31	SER 243
E	ARG 29	SER 111
P	ALA 999	PHE 1300

There are 27 helices in PDB entry 8BNZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	70	Right-handed alpha
Helix 3	AA3	A	106	117	Right-handed alpha
Helix 4	AA4	A	128	144	Right-handed alpha
Helix 5	AA5	A	189	196	Right-handed alpha
Helix 6	AA6	A	215	233	Right-handed alpha
Helix 7	AA7	A	280	285	Right-handed alpha
Helix 8	AA8	A	297	315	Right-handed alpha
Helix 9	AA9	A	361	367	Right-handed alpha
Helix 10	AB1	A	378	393	Right-handed alpha
Helix 11	AB2	A	449	452	Right-handed 310
Helix 12	AB3	A	542	552	Right-handed alpha
Helix 13	AB4	A	647	651	Right-handed 310
Helix 14	AB5	A	726	731	Right-handed alpha
Helix 15	AB6	D	32	45	Right-handed alpha
Helix 16	AB7	D	47	62	Right-handed alpha
Helix 17	AB8	D	68	82	Right-handed alpha
Helix 18	AB9	D	84	99	Right-handed alpha
Helix 19	AC1	D	104	120	Right-handed alpha
Helix 20	AC2	D	137	154	Right-handed alpha
Helix 21	AC3	D	159	189	Right-handed alpha
Helix 22	AC4	D	190	205	Right-handed alpha
Helix 23	AC5	D	208	225	Right-handed alpha
Helix 24	AC6	D	228	241	Right-handed alpha
Helix 25	AC7	E	42	46	Right-handed 310
Helix 26	AC8	E	51	60	Right-handed alpha
Helix 27	AC9	P	1000	1036	Right-handed alpha

There are 19 sheets in PDB entry 8BNZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	83	90	parallel
Strand 3	A	72	80	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	98	first strand
Strand 2	A	162	169	parallel
Strand 3	A	151	158	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	183	first strand
Strand 2	A	253	261	parallel
Strand 3	A	239	247	anti-parallel
Strand 4	B	192	194	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	276	first strand
Strand 2	A	334	343	parallel
Strand 3	A	320	329	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	355	first strand
Strand 2	A	411	420	parallel
Strand 3	A	395	398	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	355	first strand
Strand 2	A	411	420	parallel
Strand 3	A	401	404	anti-parallel

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There are 23 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	806	first strand
Strand 2	A	781	792	anti-parallel
Strand 3	A	767	778	anti-parallel
Strand 4	A	733	745	anti-parallel
Strand 5	A	710	720	anti-parallel
Strand 6	A	628	640	anti-parallel
Strand 7	A	608	620	anti-parallel
Strand 8	A	590	600	anti-parallel
Strand 9	A	564	581	anti-parallel
Strand 10	A	523	537	anti-parallel
Strand 11	A	505	518	anti-parallel
Strand 12	A	484	494	anti-parallel
Strand 13	A	466	476	anti-parallel
Strand 14	A	455	463	anti-parallel
Strand 15	A	440	447	anti-parallel
Strand 16	A	425	432	anti-parallel
Strand 17	P	1292	1299	anti-parallel
Strand 18	P	1272	1282	anti-parallel
Strand 19	P	1256	1269	anti-parallel
Strand 20	P	1220	1234	anti-parallel
Strand 21	P	1202	1213	anti-parallel
Strand 22	P	1165	1178	anti-parallel
Strand 23	P	1159	1162	anti-parallel

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There are 29 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	806	first strand
Strand 2	A	781	792	anti-parallel
Strand 3	A	767	778	anti-parallel
Strand 4	A	733	745	anti-parallel
Strand 5	A	710	720	anti-parallel
Strand 6	A	628	640	anti-parallel
Strand 7	A	608	620	anti-parallel
Strand 8	A	590	600	anti-parallel
Strand 9	A	564	581	anti-parallel
Strand 10	A	523	537	anti-parallel
Strand 11	A	505	518	anti-parallel
Strand 12	A	484	494	anti-parallel
Strand 13	A	466	476	anti-parallel
Strand 14	A	455	463	anti-parallel
Strand 15	A	440	447	anti-parallel
Strand 16	A	425	432	anti-parallel
Strand 17	P	1292	1299	anti-parallel
Strand 18	P	1272	1282	anti-parallel
Strand 19	P	1256	1269	anti-parallel
Strand 20	P	1220	1234	anti-parallel
Strand 21	P	1202	1213	anti-parallel
Strand 22	P	1165	1178	anti-parallel
Strand 23	P	1144	1157	anti-parallel
Strand 24	P	1117	1133	anti-parallel
Strand 25	P	1097	1113	anti-parallel
Strand 26	P	1076	1093	anti-parallel
Strand 27	P	1056	1073	anti-parallel
Strand 28	P	1040	1052	anti-parallel
Strand 29	P	1286	1288	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	674	first strand
Strand 2	A	700	705	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	51	first strand
Strand 2	B	386	391	anti-parallel
Strand 3	B	377	381	anti-parallel
Strand 4	B	372	374	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	76	anti-parallel
Strand 3	B	80	85	anti-parallel
Strand 4	B	94	95	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	121	123	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	184	186	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	259	anti-parallel
Strand 3	B	269	271	anti-parallel
Strand 4	B	278	279	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	295	300	anti-parallel
Strand 3	B	304	308	anti-parallel
Strand 4	B	315	319	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	345	350	anti-parallel
Strand 4	B	356	361	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	64	65	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	87	95	anti-parallel
Strand 4	E	101	107	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1181	1184	first strand
Strand 2	P	1192	1196	anti-parallel
Strand 3	P	1239	1243	anti-parallel
Strand 4	P	1246	1250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BNZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BNZ