Analysis of interatomic Contacts of Structural Units in PDB entry:
8BO2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BO2 entry

There are 6 chains in PDB entry 8BO2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 24	TRP 810
B	GLU 26	ARG 392
C	VAL 35	PRO 85
D	PRO 31	SER 243
E	ARG 29	SER 111
P	ALA 999	PHE 1300

There are 28 helices in PDB entry 8BO2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	69	Right-handed alpha
Helix 3	AA3	A	106	117	Right-handed alpha
Helix 4	AA4	A	126	145	Right-handed alpha
Helix 5	AA5	A	189	197	Right-handed alpha
Helix 6	AA6	A	215	234	Right-handed alpha
Helix 7	AA7	A	280	286	Right-handed alpha
Helix 8	AA8	A	297	315	Right-handed alpha
Helix 9	AA9	A	361	368	Right-handed alpha
Helix 10	AB1	A	378	393	Right-handed alpha
Helix 11	AB2	A	448	452	Right-handed 310
Helix 12	AB3	A	545	552	Right-handed alpha
Helix 13	AB4	A	647	651	Right-handed 310
Helix 14	AB5	D	32	45	Right-handed alpha
Helix 15	AB6	D	52	62	Right-handed alpha
Helix 16	AB7	D	68	82	Right-handed alpha
Helix 17	AB8	D	84	99	Right-handed alpha
Helix 18	AB9	D	104	120	Right-handed alpha
Helix 19	AC1	D	130	134	Right-handed 310
Helix 20	AC2	D	137	154	Right-handed alpha
Helix 21	AC3	D	159	189	Right-handed alpha
Helix 22	AC4	D	190	205	Right-handed alpha
Helix 23	AC5	D	208	224	Right-handed alpha
Helix 24	AC6	D	227	239	Right-handed alpha
Helix 25	AC7	E	39	45	Right-handed alpha
Helix 26	AC8	E	51	60	Right-handed alpha
Helix 27	AC9	P	1000	1024	Right-handed alpha
Helix 28	AD1	P	1025	1035	Right-handed alpha

There are 18 sheets in PDB entry 8BO2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	83	90	parallel
Strand 3	A	72	80	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	162	170	parallel
Strand 3	A	150	158	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	181	first strand
Strand 2	A	253	261	parallel
Strand 3	A	239	247	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	276	first strand
Strand 2	A	334	342	parallel
Strand 3	A	321	329	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	355	first strand
Strand 2	A	411	420	parallel
Strand 3	A	395	404	anti-parallel

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There are 18 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	427	first strand
Strand 2	A	437	446	anti-parallel
Strand 3	A	455	462	anti-parallel
Strand 4	A	466	475	anti-parallel
Strand 5	A	484	494	anti-parallel
Strand 6	A	505	518	anti-parallel
Strand 7	A	523	537	anti-parallel
Strand 8	A	564	579	anti-parallel
Strand 9	A	590	600	anti-parallel
Strand 10	A	608	620	anti-parallel
Strand 11	A	628	640	anti-parallel
Strand 12	A	710	720	anti-parallel
Strand 13	A	733	745	anti-parallel
Strand 14	A	767	777	anti-parallel
Strand 15	A	782	792	anti-parallel
Strand 16	A	802	806	anti-parallel
Strand 17	A	430	433	anti-parallel
Strand 18	A	437	446	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	674	first strand
Strand 2	A	700	705	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	386	390	anti-parallel
Strand 3	B	377	380	anti-parallel
Strand 4	B	372	374	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	76	anti-parallel
Strand 3	B	80	84	anti-parallel
Strand 4	B	95	96	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	121	124	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	143	146	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	184	186	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	B	215	219	anti-parallel
Strand 4	B	228	231	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	254	first strand
Strand 2	B	257	261	anti-parallel
Strand 3	B	267	271	anti-parallel
Strand 4	B	279	281	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	295	299	anti-parallel
Strand 3	B	305	309	anti-parallel
Strand 4	B	315	319	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	346	349	anti-parallel
Strand 4	B	356	360	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	87	94	anti-parallel
Strand 4	E	103	107	anti-parallel

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There are 14 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1159	1162	first strand
Strand 2	P	1165	1178	anti-parallel
Strand 3	P	1202	1215	anti-parallel
Strand 4	P	1220	1232	anti-parallel
Strand 5	P	1257	1269	anti-parallel
Strand 6	P	1272	1282	anti-parallel
Strand 7	P	1286	1297	anti-parallel
Strand 8	P	1039	1052	anti-parallel
Strand 9	P	1056	1073	anti-parallel
Strand 10	P	1076	1093	anti-parallel
Strand 11	P	1096	1112	anti-parallel
Strand 12	P	1117	1134	anti-parallel
Strand 13	P	1140	1157	anti-parallel
Strand 14	P	1165	1178	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1182	1187	first strand
Strand 2	P	1190	1195	anti-parallel
Strand 3	P	1238	1243	anti-parallel
Strand 4	P	1246	1251	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BO2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BO2