Analysis of interatomic Contacts of Structural Units in PDB entry:
8BOQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BOQ entry

There are 6 chains in PDB entry 8BOQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	LYS 516
B	THR 2	TRP 462
C	VAL 14	TYR 132
D	PRO 2	GLU 514
E	THR 2	TRP 462
F	VAL 14	TYR 132

There are116 helices in PDB entry 8BOQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	10	Right-handed 310
Helix 2	AA2	A	12	17	Right-handed 310
Helix 3	AA3	A	49	55	Right-handed alpha
Helix 4	AA4	A	72	78	Right-handed alpha
Helix 5	AA5	A	91	96	Right-handed alpha
Helix 6	AA6	A	104	110	Right-handed alpha
Helix 7	AA7	A	111	126	Right-handed alpha
Helix 8	AA8	A	137	144	Right-handed alpha
Helix 9	AA9	A	146	158	Right-handed alpha
Helix 10	AB1	A	176	191	Right-handed alpha
Helix 11	AB2	A	212	214	Right-handed 310
Helix 12	AB3	A	215	226	Right-handed alpha
Helix 13	AB4	A	240	245	Right-handed alpha
Helix 14	AB5	A	246	250	Right-handed 310
Helix 15	AB6	A	257	273	Right-handed alpha
Helix 16	AB7	A	283	298	Right-handed alpha
Helix 17	AB8	A	300	327	Right-handed alpha
Helix 18	AB9	A	338	344	Right-handed alpha
Helix 19	AC1	A	345	352	Right-handed alpha
Helix 20	AC2	A	364	375	Right-handed alpha
Helix 21	AC3	A	386	398	Right-handed alpha
Helix 22	AC4	A	405	415	Right-handed alpha
Helix 23	AC5	A	431	448	Right-handed alpha
Helix 24	AC6	A	449	456	Right-handed alpha
Helix 25	AC7	A	473	479	Right-handed alpha
Helix 26	AC8	A	483	489	Right-handed alpha
Helix 27	AC9	A	502	507	Right-handed alpha
Helix 28	AD1	B	20	31	Right-handed alpha
Helix 29	AD2	B	43	58	Right-handed alpha
Helix 30	AD3	B	69	76	Right-handed alpha
Helix 31	AD4	B	77	90	Right-handed alpha
Helix 32	AD5	B	103	110	Right-handed alpha
Helix 33	AD6	B	112	123	Right-handed alpha
Helix 34	AD7	B	123	128	Right-handed alpha
Helix 35	AD8	B	147	164	Right-handed alpha
Helix 36	AD9	B	181	196	Right-handed alpha
Helix 37	AE1	B	205	209	Right-handed 310
Helix 38	AE2	B	225	231	Right-handed alpha
Helix 39	AE3	B	232	235	Right-handed 310
Helix 40	AE4	B	242	258	Right-handed alpha
Helix 41	AE5	B	269	285	Right-handed alpha
Helix 42	AE6	B	289	305	Right-handed alpha
Helix 43	AE7	B	306	311	Right-handed alpha
Helix 44	AE8	B	321	335	Right-handed alpha
Helix 45	AE9	B	350	353	Right-handed 310
Helix 46	AF1	B	354	364	Right-handed alpha
Helix 47	AF2	B	376	386	Right-handed alpha
Helix 48	AF3	B	396	398	Right-handed 310
Helix 49	AF4	B	399	406	Right-handed alpha
Helix 50	AF5	B	422	426	Right-handed 310
Helix 51	AF6	B	429	453	Right-handed alpha
Helix 52	AF7	B	455	459	Right-handed 310
Helix 53	AF8	C	21	36	Right-handed alpha
Helix 54	AF9	C	43	64	Right-handed alpha
Helix 55	AG1	C	71	92	Right-handed alpha
Helix 56	AG2	C	93	98	Right-handed 310
Helix 57	AG3	C	99	119	Right-handed alpha
Helix 58	AG4	D	6	10	Right-handed 310
Helix 59	AG5	D	12	17	Right-handed 310
Helix 60	AG6	D	49	55	Right-handed alpha
Helix 61	AG7	D	72	78	Right-handed alpha
Helix 62	AG8	D	91	96	Right-handed alpha
Helix 63	AG9	D	104	110	Right-handed alpha
Helix 64	AH1	D	111	126	Right-handed alpha
Helix 65	AH2	D	137	144	Right-handed alpha
Helix 66	AH3	D	146	158	Right-handed alpha
Helix 67	AH4	D	176	191	Right-handed alpha
Helix 68	AH5	D	212	214	Right-handed 310
Helix 69	AH6	D	215	227	Right-handed alpha
Helix 70	AH7	D	240	245	Right-handed alpha
Helix 71	AH8	D	246	250	Right-handed 310
Helix 72	AH9	D	257	273	Right-handed alpha
Helix 73	AI1	D	283	298	Right-handed alpha
Helix 74	AI2	D	300	327	Right-handed alpha
Helix 75	AI3	D	338	344	Right-handed alpha
Helix 76	AI4	D	345	352	Right-handed alpha
Helix 77	AI5	D	364	375	Right-handed alpha
Helix 78	AI6	D	386	398	Right-handed alpha
Helix 79	AI7	D	405	415	Right-handed alpha
Helix 80	AI8	D	431	448	Right-handed alpha
Helix 81	AI9	D	449	456	Right-handed alpha
Helix 82	AJ1	D	473	479	Right-handed alpha
Helix 83	AJ2	D	483	488	Right-handed alpha
Helix 84	AJ3	D	502	508	Right-handed alpha
Helix 85	AJ4	E	20	31	Right-handed alpha
Helix 86	AJ5	E	43	58	Right-handed alpha
Helix 87	AJ6	E	69	76	Right-handed alpha
Helix 88	AJ7	E	77	90	Right-handed alpha
Helix 89	AJ8	E	103	109	Right-handed alpha
Helix 90	AJ9	E	112	123	Right-handed alpha
Helix 91	AK1	E	123	129	Right-handed alpha
Helix 92	AK2	E	147	164	Right-handed alpha
Helix 93	AK3	E	181	196	Right-handed alpha
Helix 94	AK4	E	205	209	Right-handed 310
Helix 95	AK5	E	225	232	Right-handed alpha
Helix 96	AK6	E	233	235	Right-handed 310
Helix 97	AK7	E	242	258	Right-handed alpha
Helix 98	AK8	E	269	285	Right-handed alpha
Helix 99	AK9	E	289	305	Right-handed alpha
Helix 100	AL1	E	306	311	Right-handed alpha
Helix 101	AL2	E	321	335	Right-handed alpha
Helix 102	AL3	E	350	353	Right-handed 310
Helix 103	AL4	E	354	364	Right-handed alpha
Helix 104	AL5	E	376	386	Right-handed alpha
Helix 105	AL6	E	396	398	Right-handed 310
Helix 106	AL7	E	399	406	Right-handed alpha
Helix 107	AL8	E	422	426	Right-handed 310
Helix 108	AL9	E	429	453	Right-handed alpha
Helix 109	AM1	E	455	459	Right-handed 310
Helix 110	AM2	F	21	36	Right-handed alpha
Helix 111	AM3	F	37	41	Right-handed 310
Helix 112	AM4	F	43	63	Right-handed alpha
Helix 113	AM5	F	71	92	Right-handed alpha
Helix 114	AM6	F	93	98	Right-handed 310
Helix 115	AM7	F	99	119	Right-handed alpha
Helix 116	AM8	F	124	129	Right-handed 310

There are 12 sheets in PDB entry 8BOQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	380	383	anti-parallel
Strand 3	A	354	360	parallel
Strand 4	A	330	333	parallel
Strand 5	A	401	404	parallel
Strand 6	A	419	421	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	166	first strand
Strand 2	A	131	136	parallel
Strand 3	A	66	70	parallel
Strand 4	A	98	99	parallel
Strand 5	B	13	14	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	236	first strand
Strand 2	A	204	210	parallel
Strand 3	A	252	255	parallel
Strand 4	A	276	278	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	368	372	parallel
Strand 3	B	338	343	parallel
Strand 4	B	315	318	parallel
Strand 5	B	392	395	parallel
Strand 6	B	410	412	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	38	40	parallel
Strand 3	B	97	102	parallel
Strand 4	B	135	139	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	173	176	parallel
Strand 3	B	237	240	parallel
Strand 4	B	261	263	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	21	first strand
Strand 2	D	380	383	anti-parallel
Strand 3	D	354	360	parallel
Strand 4	D	330	333	parallel
Strand 5	D	401	404	parallel
Strand 6	D	419	421	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	166	first strand
Strand 2	D	131	136	parallel
Strand 3	D	66	70	parallel
Strand 4	D	98	99	parallel
Strand 5	E	13	14	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	236	first strand
Strand 2	D	204	210	parallel
Strand 3	D	252	255	parallel
Strand 4	D	276	278	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	368	372	parallel
Strand 3	E	338	343	parallel
Strand 4	E	315	318	parallel
Strand 5	E	392	395	parallel
Strand 6	E	410	412	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	65	first strand
Strand 2	E	38	40	parallel
Strand 3	E	97	102	parallel
Strand 4	E	135	139	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	202	first strand
Strand 2	E	173	176	parallel
Strand 3	E	237	240	parallel
Strand 4	E	261	263	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BOQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BOQ