Analysis of interatomic Contacts of Structural Units in PDB entry:
8BOS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BOS entry

There are 2 chains in PDB entry 8BOS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
MET 1HIS 166
G
LYS 716LYS 1042
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8BOS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
R
15 26Right-handed alpha
Helix 2
AA2
R
61 66Right-handed 310
Helix 3
AA3
R
67 75Right-handed alpha
Helix 4
AA4
R
86 92Right-handed alpha
Helix 5
AA5
R
92 104Right-handed alpha
Helix 6
AA6
R
126 138Right-handed alpha
Helix 7
AA7
R
151 165Right-handed alpha
Helix 8
AA8
G
719 722Right-handed 310
Helix 9
AA9
G
723 731Right-handed alpha
Helix 10
AB1
G
735 745Right-handed alpha
Helix 11
AB2
G
748 763Right-handed alpha
Helix 12
AB3
G
765 782Right-handed alpha
Helix 13
AB4
G
792 824Right-handed alpha
Helix 14
AB5
G
840 861Right-handed alpha
Helix 15
AB6
G
867 885Right-handed alpha
Helix 16
AB7
G
890 901Right-handed alpha
Helix 17
AB8
G
904 911Right-handed alpha
Helix 18
AB9
G
912 916Right-handed 310
Helix 19
AC1
G
923 943Right-handed alpha
Helix 20
AC2
G
953 955Right-handed 310
Helix 21
AC3
G
956 974Right-handed alpha
Helix 22
AC4
G
991 1005Right-handed alpha
Helix 23
AC5
G
1005 1013Right-handed alpha
Helix 24
AC6
G
1019 1041Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8BOS.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
37 46first strand
Strand 2
R
49 58anti-parallel
Strand 3
R
3 10parallel
Strand 4
R
77 83parallel
Strand 5
R
111 116parallel
Strand 6
R
141 143parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il