Analysis of interatomic Contacts of Structural Units in PDB entry:
8BP6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BP6 entry

There are 2 chains in PDB entry 8BP6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 1	VAL 384
B	ILE 1	VAL 384

There are 14 helices in PDB entry 8BP6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	162	167	Right-handed alpha
Helix 2	AA2	A	170	200	Right-handed alpha
Helix 3	AA3	A	248	261	Right-handed alpha
Helix 4	AA4	A	261	274	Right-handed alpha
Helix 5	AA5	A	274	287	Right-handed alpha
Helix 6	AA6	A	287	292	Right-handed alpha
Helix 7	AA7	A	332	334	Right-handed 310
Helix 8	AA8	B	162	167	Right-handed alpha
Helix 9	AA9	B	170	200	Right-handed alpha
Helix 10	AB1	B	248	261	Right-handed alpha
Helix 11	AB2	B	261	274	Right-handed alpha
Helix 12	AB3	B	274	287	Right-handed alpha
Helix 13	AB4	B	287	292	Right-handed alpha
Helix 14	AB5	B	332	334	Right-handed 310

There are 13 sheets in PDB entry 8BP6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	11	first strand
Strand 2	A	21	30	anti-parallel
Strand 3	A	62	70	anti-parallel
Strand 4	A	50	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	11	first strand
Strand 2	A	21	30	anti-parallel
Strand 3	A	62	70	anti-parallel
Strand 4	A	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	36	41	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	91	94	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	160	first strand
Strand 2	A	146	152	anti-parallel
Strand 3	A	137	143	anti-parallel
Strand 4	A	118	127	anti-parallel
Strand 5	A	206	215	anti-parallel
Strand 6	A	221	229	anti-parallel
Strand 7	A	232	238	anti-parallel
Strand 8	A	243	246	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	304	first strand
Strand 2	A	312	320	anti-parallel
Strand 3	A	353	360	anti-parallel
Strand 4	A	341	342	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	304	first strand
Strand 2	A	312	320	anti-parallel
Strand 3	A	353	360	anti-parallel
Strand 4	A	346	347	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	326	331	anti-parallel
Strand 3	A	370	375	anti-parallel
Strand 4	A	378	383	anti-parallel
Strand 5	B	378	383	anti-parallel
Strand 6	B	370	375	anti-parallel
Strand 7	B	326	331	anti-parallel
Strand 8	B	335	336	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	160	first strand
Strand 2	B	146	152	anti-parallel
Strand 3	B	137	143	anti-parallel
Strand 4	B	118	127	anti-parallel
Strand 5	B	206	215	anti-parallel
Strand 6	B	221	229	anti-parallel
Strand 7	B	232	238	anti-parallel
Strand 8	B	243	246	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	304	first strand
Strand 2	B	312	320	anti-parallel
Strand 3	B	353	360	anti-parallel
Strand 4	B	341	342	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	304	first strand
Strand 2	B	312	320	anti-parallel
Strand 3	B	353	360	anti-parallel
Strand 4	B	346	347	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BP6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BP6