Analysis of interatomic Contacts of Structural Units in PDB entry:
8BP7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BP7 entry

There are 6 chains in PDB entry 8BP7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	ASP 380
B	ALA 3	ASP 380
C	VAL 4	ASP 378
D	THR 2	ARG 379
E	ALA 3	LEU 381
F	ALA 3	ARG 379

There are109 helices in PDB entry 8BP7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	12	Right-handed 310
Helix 2	AA2	A	38	45	Right-handed alpha
Helix 3	AA3	A	46	57	Right-handed alpha
Helix 4	AA4	A	61	75	Right-handed alpha
Helix 5	AA5	A	79	88	Right-handed alpha
Helix 6	AA6	A	94	110	Right-handed alpha
Helix 7	AA7	A	117	144	Right-handed alpha
Helix 8	AA8	A	156	167	Right-handed alpha
Helix 9	AA9	A	171	185	Right-handed alpha
Helix 10	AB1	A	191	203	Right-handed alpha
Helix 11	AB2	A	206	220	Right-handed alpha
Helix 12	AB3	A	225	238	Right-handed alpha
Helix 13	AB4	A	242	254	Right-handed alpha
Helix 14	AB5	A	269	287	Right-handed alpha
Helix 15	AB6	A	289	301	Right-handed alpha
Helix 16	AB7	A	314	327	Right-handed alpha
Helix 17	AB8	A	329	331	Right-handed 310
Helix 18	AB9	A	332	355	Right-handed alpha
Helix 19	AC1	B	8	12	Right-handed 310
Helix 20	AC2	B	38	43	Right-handed alpha
Helix 21	AC3	B	46	57	Right-handed alpha
Helix 22	AC4	B	61	75	Right-handed alpha
Helix 23	AC5	B	79	89	Right-handed alpha
Helix 24	AC6	B	94	111	Right-handed alpha
Helix 25	AC7	B	117	144	Right-handed alpha
Helix 26	AC8	B	156	167	Right-handed alpha
Helix 27	AC9	B	171	187	Right-handed alpha
Helix 28	AD1	B	191	203	Right-handed alpha
Helix 29	AD2	B	206	220	Right-handed alpha
Helix 30	AD3	B	226	238	Right-handed alpha
Helix 31	AD4	B	239	253	Right-handed alpha
Helix 32	AD5	B	269	287	Right-handed alpha
Helix 33	AD6	B	289	302	Right-handed alpha
Helix 34	AD7	B	314	326	Right-handed alpha
Helix 35	AD8	B	329	331	Right-handed 310
Helix 36	AD9	B	332	355	Right-handed alpha
Helix 37	AE1	C	8	12	Right-handed 310
Helix 38	AE2	C	38	45	Right-handed alpha
Helix 39	AE3	C	46	57	Right-handed alpha
Helix 40	AE4	C	61	75	Right-handed alpha
Helix 41	AE5	C	79	89	Right-handed alpha
Helix 42	AE6	C	94	111	Right-handed alpha
Helix 43	AE7	C	117	144	Right-handed alpha
Helix 44	AE8	C	156	167	Right-handed alpha
Helix 45	AE9	C	171	187	Right-handed alpha
Helix 46	AF1	C	191	203	Right-handed alpha
Helix 47	AF2	C	206	220	Right-handed alpha
Helix 48	AF3	C	226	238	Right-handed alpha
Helix 49	AF4	C	242	252	Right-handed alpha
Helix 50	AF5	C	269	287	Right-handed alpha
Helix 51	AF6	C	289	309	Right-handed alpha
Helix 52	AF7	C	314	326	Right-handed alpha
Helix 53	AF8	C	329	331	Right-handed 310
Helix 54	AF9	C	332	355	Right-handed alpha
Helix 55	AG1	D	8	12	Right-handed 310
Helix 56	AG2	D	38	45	Right-handed alpha
Helix 57	AG3	D	46	57	Right-handed alpha
Helix 58	AG4	D	61	75	Right-handed alpha
Helix 59	AG5	D	79	89	Right-handed alpha
Helix 60	AG6	D	94	110	Right-handed alpha
Helix 61	AG7	D	117	144	Right-handed alpha
Helix 62	AG8	D	156	167	Right-handed alpha
Helix 63	AG9	D	171	185	Right-handed alpha
Helix 64	AH1	D	191	203	Right-handed alpha
Helix 65	AH2	D	206	220	Right-handed alpha
Helix 66	AH3	D	228	238	Right-handed alpha
Helix 67	AH4	D	239	253	Right-handed alpha
Helix 68	AH5	D	269	287	Right-handed alpha
Helix 69	AH6	D	289	307	Right-handed alpha
Helix 70	AH7	D	316	327	Right-handed alpha
Helix 71	AH8	D	329	331	Right-handed 310
Helix 72	AH9	D	332	356	Right-handed alpha
Helix 73	AI1	E	8	12	Right-handed 310
Helix 74	AI2	E	38	45	Right-handed alpha
Helix 75	AI3	E	46	57	Right-handed alpha
Helix 76	AI4	E	61	75	Right-handed alpha
Helix 77	AI5	E	79	89	Right-handed alpha
Helix 78	AI6	E	94	111	Right-handed alpha
Helix 79	AI7	E	117	144	Right-handed alpha
Helix 80	AI8	E	156	165	Right-handed alpha
Helix 81	AI9	E	171	185	Right-handed alpha
Helix 82	AJ1	E	191	202	Right-handed alpha
Helix 83	AJ2	E	206	220	Right-handed alpha
Helix 84	AJ3	E	228	238	Right-handed alpha
Helix 85	AJ4	E	246	252	Right-handed alpha
Helix 86	AJ5	E	269	287	Right-handed alpha
Helix 87	AJ6	E	289	301	Right-handed alpha
Helix 88	AJ7	E	317	327	Right-handed alpha
Helix 89	AJ8	E	329	331	Right-handed 310
Helix 90	AJ9	E	332	355	Right-handed alpha
Helix 91	AK1	E	375	379	Right-handed 310
Helix 92	AK2	F	8	12	Right-handed 310
Helix 93	AK3	F	38	44	Right-handed alpha
Helix 94	AK4	F	46	57	Right-handed alpha
Helix 95	AK5	F	61	76	Right-handed alpha
Helix 96	AK6	F	79	88	Right-handed alpha
Helix 97	AK7	F	94	111	Right-handed alpha
Helix 98	AK8	F	117	144	Right-handed alpha
Helix 99	AK9	F	156	167	Right-handed alpha
Helix 100	AL1	F	171	186	Right-handed alpha
Helix 101	AL2	F	191	203	Right-handed alpha
Helix 102	AL3	F	206	220	Right-handed alpha
Helix 103	AL4	F	226	237	Right-handed alpha
Helix 104	AL5	F	242	252	Right-handed alpha
Helix 105	AL6	F	269	287	Right-handed alpha
Helix 106	AL7	F	289	308	Right-handed alpha
Helix 107	AL8	F	315	327	Right-handed alpha
Helix 108	AL9	F	329	331	Right-handed 310
Helix 109	AM1	F	332	355	Right-handed alpha

There are 12 sheets in PDB entry 8BP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	19	first strand
Strand 2	B	362	365	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	25	first strand
Strand 2	A	30	33	anti-parallel
Strand 3	A	36	37	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	365	first strand
Strand 2	B	15	19	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	24	first strand
Strand 2	B	31	33	anti-parallel
Strand 3	B	36	37	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	19	first strand
Strand 2	E	362	365	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	24	first strand
Strand 2	C	31	33	anti-parallel
Strand 3	C	36	37	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	365	first strand
Strand 2	E	15	19	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	19	first strand
Strand 2	F	362	365	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	24	first strand
Strand 2	D	31	33	anti-parallel
Strand 3	D	36	37	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	362	365	first strand
Strand 2	F	15	19	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	24	first strand
Strand 2	E	31	33	anti-parallel
Strand 3	E	36	37	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	22	24	first strand
Strand 2	F	31	33	anti-parallel
Strand 3	F	36	37	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BP7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BP7