Analysis of interatomic Contacts of Structural Units in PDB entry:
8BPA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BPA entry

There are 4 chains in PDB entry 8BPA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 304LEU 939
B
 GLY 8PRO 375
C
 SER 17PRO 364
D
 PRO 200VAL 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8BPA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
304 319Right-handed alpha
Helix 2
AA2
A
320 336Right-handed alpha
Helix 3
AA3
A
340 349Right-handed alpha
Helix 4
AA4
A
355 367Right-handed alpha
Helix 5
AA5
A
417 424Right-handed alpha
Helix 6
AA6
A
446 484Right-handed alpha
Helix 7
AA7
A
485 486Right-handed 310
Helix 8
AA8
A
487 494Right-handed 310
Helix 9
AA9
A
506 517Right-handed alpha
Helix 10
AB1
A
519 530Right-handed alpha
Helix 11
AB2
A
530 561Right-handed alpha
Helix 12
AB3
A
567 573Right-handed alpha
Helix 13
AB4
A
575 587Right-handed alpha
Helix 14
AB5
A
588 610Right-handed alpha
Helix 15
AB6
A
627 642Right-handed alpha
Helix 16
AB7
A
648 667Right-handed alpha
Helix 17
AB8
A
746 786Right-handed alpha
Helix 18
AB9
A
788 792Right-handed 310
Helix 19
AC1
A
808 829Right-handed alpha
Helix 20
AC2
A
832 845Right-handed alpha
Helix 21
AC3
A
846 851Right-handed 310
Helix 22
AC4
A
853 871Right-handed alpha
Helix 23
AC5
A
871 887Right-handed alpha
Helix 24
AC6
A
896 916Right-handed alpha
Helix 25
AC7
B
34 46Right-handed alpha
Helix 26
AC8
B
61 66Right-handed alpha
Helix 27
AC9
B
70 80Right-handed alpha
Helix 28
AD1
B
81 87Right-handed 310
Helix 29
AD2
B
88 95Right-handed alpha
Helix 30
AD3
B
106 127Right-handed alpha
Helix 31
AD4
B
155 165Right-handed alpha
Helix 32
AD5
B
181 188Right-handed alpha
Helix 33
AD6
B
217 221Right-handed 310
Helix 34
AD7
B
234 253Right-handed alpha
Helix 35
AD8
B
263 267Right-handed 310
Helix 36
AD9
B
278 291Right-handed alpha
Helix 37
AE1
B
305 321Right-handed alpha
Helix 38
AE2
B
334 339Right-handed 310
Helix 39
AE3
B
356 373Right-handed alpha
Helix 40
AE4
C
20 28Right-handed alpha
Helix 41
AE5
C
99 112Right-handed alpha
Helix 42
AE6
C
206 220Right-handed alpha
Helix 43
AE7
C
228 233Right-handed alpha
Helix 44
AE8
C
320 325Right-handed alpha
Helix 45
AE9
C
330 342Right-handed alpha
Helix 46
AF1
C
347 360Right-handed alpha
Helix 47
AF2
D
204 216Right-handed alpha
Helix 48
AF3
D
228 242Right-handed alpha
Helix 49
AF4
D
249 267Right-handed alpha
Helix 50
AF5
D
274 276Right-handed 310
Helix 51
AF6
D
277 288Right-handed alpha
Helix 52
AF7
D
299 313Right-handed alpha
Helix 53
AF8
D
314 316Right-handed 310
Helix 54
AF9
D
319 340Right-handed alpha
Helix 55
AG1
D
340 345Right-handed alpha
Helix 56
AG2
D
354 362Right-handed alpha
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There are 5 sheets in PDB entry 8BPA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 397first strand
Strand 2
A
401 403anti-parallel
Strand 3
A
428 429anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 624first strand
Strand 2
A
931 939anti-parallel
Strand 3
A
920 928anti-parallel
Strand 4
A
739 745anti-parallel
Strand 5
A
892 893anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
13 15parallel
Strand 3
B
132 135parallel
Strand 4
B
296 299parallel
Strand 5
B
257 261parallel
Strand 6
B
171 175parallel
Strand 7
B
194 201parallel
Strand 8
B
224 229parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 70first strand
Strand 2
C
77 79anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
287 288first strand
Strand 2
C
295 296anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il