Analysis of interatomic Contacts of Structural Units in PDB entry:
8BPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BPB entry

There are 3 chains in PDB entry 8BPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 304LEU 939
B
 GLY 8PRO 375
C
 SER 17PRO 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8BPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
304 319Right-handed alpha
Helix 2
AA2
A
321 336Right-handed alpha
Helix 3
AA3
A
340 349Right-handed alpha
Helix 4
AA4
A
355 367Right-handed alpha
Helix 5
AA5
A
417 424Right-handed alpha
Helix 6
AA6
A
446 484Right-handed alpha
Helix 7
AA7
A
487 492Right-handed alpha
Helix 8
AA8
A
506 517Right-handed alpha
Helix 9
AA9
A
519 530Right-handed alpha
Helix 10
AB1
A
530 561Right-handed alpha
Helix 11
AB2
A
563 573Right-handed alpha
Helix 12
AB3
A
575 587Right-handed alpha
Helix 13
AB4
A
588 610Right-handed alpha
Helix 14
AB5
A
626 643Right-handed alpha
Helix 15
AB6
A
648 661Right-handed alpha
Helix 16
AB7
A
661 667Right-handed alpha
Helix 17
AB8
A
746 786Right-handed alpha
Helix 18
AB9
A
788 792Right-handed 310
Helix 19
AC1
A
808 829Right-handed alpha
Helix 20
AC2
A
832 845Right-handed alpha
Helix 21
AC3
A
846 852Right-handed 310
Helix 22
AC4
A
853 871Right-handed alpha
Helix 23
AC5
A
871 887Right-handed alpha
Helix 24
AC6
A
896 915Right-handed alpha
Helix 25
AC7
B
19 23Right-handed 310
Helix 26
AC8
B
33 46Right-handed alpha
Helix 27
AC9
B
61 66Right-handed alpha
Helix 28
AD1
B
70 80Right-handed alpha
Helix 29
AD2
B
81 87Right-handed 310
Helix 30
AD3
B
88 95Right-handed alpha
Helix 31
AD4
B
106 127Right-handed alpha
Helix 32
AD5
B
155 165Right-handed alpha
Helix 33
AD6
B
181 188Right-handed alpha
Helix 34
AD7
B
217 221Right-handed 310
Helix 35
AD8
B
234 254Right-handed alpha
Helix 36
AD9
B
278 292Right-handed alpha
Helix 37
AE1
B
305 321Right-handed alpha
Helix 38
AE2
B
334 339Right-handed 310
Helix 39
AE3
B
356 372Right-handed alpha
Helix 40
AE4
C
20 28Right-handed alpha
Helix 41
AE5
C
319 324Right-handed alpha
Helix 42
AE6
C
330 340Right-handed alpha
Helix 43
AE7
C
347 360Right-handed alpha
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There are 4 sheets in PDB entry 8BPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 397first strand
Strand 2
A
401 403anti-parallel
Strand 3
A
428 430anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 624first strand
Strand 2
A
931 938anti-parallel
Strand 3
A
921 928anti-parallel
Strand 4
A
739 745anti-parallel
Strand 5
A
892 893anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
13 15parallel
Strand 3
B
132 135parallel
Strand 4
B
296 299parallel
Strand 5
B
257 261parallel
Strand 6
B
171 175parallel
Strand 7
B
194 201parallel
Strand 8
B
224 229parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
286 288first strand
Strand 2
C
295 297anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il