Analysis of interatomic Contacts of Structural Units in PDB entry:
8BPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BPD entry

There is 1 chain in PDB entry 8BPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 25GLU 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8BPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 29Right-handed 310
Helix 2
AA2
A
40 49Right-handed alpha
Helix 3
AA3
A
52 64Right-handed alpha
Helix 4
AA4
A
92 97Right-handed alpha
Helix 5
AA5
A
98 102Right-handed 310
Helix 6
AA6
A
108 121Right-handed alpha
Helix 7
AA7
A
143 158Right-handed alpha
Helix 8
AA8
A
161 177Right-handed alpha
Helix 9
AA9
A
188 192Right-handed 310
Helix 10
AB1
A
195 207Right-handed alpha
Helix 11
AB2
A
273 277Right-handed 310
Helix 12
AB3
A
282 288Right-handed alpha
Helix 13
AB4
A
288 298Right-handed alpha
Helix 14
AB5
A
328 342Right-handed alpha
Helix 15
AB6
A
358 374Right-handed alpha
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There are 3 sheets in PDB entry 8BPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 214first strand
Strand 2
A
183 187parallel
Strand 3
A
124 130parallel
Strand 4
A
69 73parallel
Strand 5
A
32 35parallel
Strand 6
A
345 349parallel
Strand 7
A
309 313parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
238 242anti-parallel
Strand 3
A
389 391anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
356 357anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il