Analysis of interatomic Contacts of Structural Units in PDB entry:
8BPF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BPF entry

There are 12 chains in PDB entry 8BPF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 346	TYR 576
B	ARG 346	THR 571
C	ARG 346	SER 569
D	ILE 345	MET 568
E	ILE 345	MET 568
F	ILE 345	MET 568
G	ILE 345	MET 568
H	ILE 345	ASP 570
I	ILE 19	SER 124
J	GLU 3	TYR 134
K	ARG 346	CYS 575
L	LEU 449	TYR 576

There are 43 helices in PDB entry 8BPF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	353	361	Right-handed alpha
Helix 2	AA2	A	414	420	Right-handed alpha
Helix 3	AA3	A	460	466	Right-handed alpha
Helix 4	AA4	A	496	498	Right-handed 310
Helix 5	AA5	A	525	529	Right-handed alpha
Helix 6	AA6	B	353	361	Right-handed alpha
Helix 7	AA7	B	414	421	Right-handed alpha
Helix 8	AA8	B	460	466	Right-handed alpha
Helix 9	AA9	B	525	531	Right-handed alpha
Helix 10	AB1	C	353	361	Right-handed alpha
Helix 11	AB2	C	414	420	Right-handed alpha
Helix 12	AB3	C	460	465	Right-handed alpha
Helix 13	AB4	C	496	498	Right-handed 310
Helix 14	AB5	C	524	529	Right-handed alpha
Helix 15	AB6	D	353	361	Right-handed alpha
Helix 16	AB7	D	414	421	Right-handed alpha
Helix 17	AB8	D	460	466	Right-handed alpha
Helix 18	AB9	D	524	531	Right-handed alpha
Helix 19	AC1	E	353	361	Right-handed alpha
Helix 20	AC2	E	414	421	Right-handed alpha
Helix 21	AC3	E	461	466	Right-handed 310
Helix 22	AC4	E	524	531	Right-handed alpha
Helix 23	AC5	E	553	557	Right-handed 310
Helix 24	AC6	F	353	361	Right-handed alpha
Helix 25	AC7	F	414	421	Right-handed alpha
Helix 26	AC8	F	461	466	Right-handed 310
Helix 27	AC9	F	496	498	Right-handed 310
Helix 28	AD1	F	524	529	Right-handed alpha
Helix 29	AD2	F	553	558	Right-handed 310
Helix 30	AD3	G	353	361	Right-handed alpha
Helix 31	AD4	G	414	421	Right-handed alpha
Helix 32	AD5	G	525	529	Right-handed alpha
Helix 33	AD6	H	353	360	Right-handed alpha
Helix 34	AD7	H	414	419	Right-handed alpha
Helix 35	AD8	H	524	529	Right-handed alpha
Helix 36	AD9	J	64	68	Right-handed alpha
Helix 37	AE1	J	116	120	Right-handed 310
Helix 38	AE2	K	353	360	Right-handed alpha
Helix 39	AE3	K	414	421	Right-handed alpha
Helix 40	AE4	K	460	466	Right-handed alpha
Helix 41	AE5	K	496	500	Right-handed 310
Helix 42	AE6	K	524	529	Right-handed alpha
Helix 43	AE7	L	526	530	Right-handed 310

There are 58 sheets in PDB entry 8BPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	350	first strand
Strand 2	A	366	369	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	384	first strand
Strand 2	A	424	428	anti-parallel
Strand 3	A	437	440	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	469	479	anti-parallel
Strand 3	A	519	524	anti-parallel
Strand 4	A	500	502	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	469	479	anti-parallel
Strand 3	A	515	517	anti-parallel
Strand 4	A	506	507	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	485	490	anti-parallel
Strand 3	A	534	539	anti-parallel
Strand 4	A	547	548	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	485	490	anti-parallel
Strand 3	A	534	539	anti-parallel
Strand 4	A	551	552	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	563	first strand
Strand 2	B	561	563	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	569	first strand
Strand 2	J	59	63	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	383	first strand
Strand 2	B	424	429	anti-parallel
Strand 3	B	440	441	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	457	first strand
Strand 2	B	469	477	anti-parallel
Strand 3	B	515	524	anti-parallel
Strand 4	B	500	502	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	457	first strand
Strand 2	B	469	477	anti-parallel
Strand 3	B	515	524	anti-parallel
Strand 4	B	506	507	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	494	first strand
Strand 2	B	485	490	anti-parallel
Strand 3	B	534	539	anti-parallel
Strand 4	B	548	552	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	350	first strand
Strand 2	C	364	372	anti-parallel
Strand 3	C	405	412	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	383	first strand
Strand 2	C	424	430	anti-parallel
Strand 3	C	433	441	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	457	first strand
Strand 2	C	470	479	anti-parallel
Strand 3	C	519	523	anti-parallel
Strand 4	C	500	502	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	457	first strand
Strand 2	C	470	479	anti-parallel
Strand 3	C	515	517	anti-parallel
Strand 4	C	506	507	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	493	494	first strand
Strand 2	C	485	490	anti-parallel
Strand 3	C	535	539	anti-parallel
Strand 4	C	548	551	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	350	first strand
Strand 2	D	364	370	anti-parallel
Strand 3	D	408	412	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	383	first strand
Strand 2	D	425	429	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	457	first strand
Strand 2	D	470	477	anti-parallel
Strand 3	D	515	523	anti-parallel
Strand 4	D	500	501	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	457	first strand
Strand 2	D	470	477	anti-parallel
Strand 3	D	515	523	anti-parallel
Strand 4	D	506	507	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	493	494	first strand
Strand 2	D	485	490	anti-parallel
Strand 3	D	535	539	anti-parallel
Strand 4	D	547	551	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	565	567	first strand
Strand 2	E	565	567	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	350	first strand
Strand 2	E	366	372	anti-parallel
Strand 3	E	405	410	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	379	383	first strand
Strand 2	E	425	429	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	457	first strand
Strand 2	E	470	477	anti-parallel
Strand 3	E	516	523	anti-parallel
Strand 4	E	500	502	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	493	494	first strand
Strand 2	E	485	490	anti-parallel
Strand 3	E	534	539	anti-parallel
Strand 4	E	547	552	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	346	350	first strand
Strand 2	F	366	370	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	380	383	first strand
Strand 2	F	424	428	anti-parallel
Strand 3	F	440	441	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	453	457	first strand
Strand 2	F	470	479	anti-parallel
Strand 3	F	515	523	anti-parallel
Strand 4	F	500	502	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	453	457	first strand
Strand 2	F	470	479	anti-parallel
Strand 3	F	515	523	anti-parallel
Strand 4	F	506	507	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	493	494	first strand
Strand 2	F	487	490	anti-parallel
Strand 3	F	535	538	anti-parallel
Strand 4	F	548	551	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	566	567	first strand
Strand 2	G	566	567	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	347	350	first strand
Strand 2	G	364	369	anti-parallel
Strand 3	G	411	412	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	379	381	first strand
Strand 2	G	427	429	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	399	400	first strand
Strand 2	G	404	405	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	453	457	first strand
Strand 2	G	473	479	anti-parallel
Strand 3	G	515	519	anti-parallel
Strand 4	G	506	507	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	469	471	first strand
Strand 2	G	522	524	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	485	489	first strand
Strand 2	G	535	539	anti-parallel
Strand 3	G	548	550	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	347	350	first strand
Strand 2	H	366	372	anti-parallel
Strand 3	H	405	408	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	379	383	first strand
Strand 2	H	424	429	anti-parallel
Strand 3	H	437	441	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	453	457	first strand
Strand 2	H	470	479	anti-parallel
Strand 3	H	519	523	anti-parallel
Strand 4	H	501	502	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	453	457	first strand
Strand 2	H	470	479	anti-parallel
Strand 3	H	515	517	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	493	494	first strand
Strand 2	H	485	490	anti-parallel
Strand 3	H	535	539	anti-parallel
Strand 4	H	547	550	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	562	564	first strand
Strand 2	K	562	564	parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	32	38	first strand
Strand 2	I	86	92	anti-parallel
Strand 3	I	77	81	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	100	105	first strand
Strand 2	I	114	120	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	6	first strand
Strand 2	J	18	21	anti-parallel
Strand 3	J	33	37	anti-parallel
Strand 4	L	562	564	parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	40	41	first strand
Strand 2	L	567	568	parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	103	104	first strand
Strand 2	L	574	575	parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	110	115	first strand
Strand 2	J	122	127	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	347	350	first strand
Strand 2	K	364	369	anti-parallel
Strand 3	K	411	412	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	379	383	first strand
Strand 2	K	425	429	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	453	457	first strand
Strand 2	K	470	477	anti-parallel
Strand 3	K	519	523	anti-parallel
Strand 4	K	501	502	anti-parallel

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There are 3 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	487	489	first strand
Strand 2	K	535	538	anti-parallel
Strand 3	K	548	550	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	454	457	first strand
Strand 2	L	469	478	anti-parallel
Strand 3	L	515	524	anti-parallel
Strand 4	L	501	502	anti-parallel

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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	454	457	first strand
Strand 2	L	469	478	anti-parallel
Strand 3	L	515	524	anti-parallel
Strand 4	L	506	507	anti-parallel

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There are 2 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	489	490	first strand
Strand 2	L	493	494	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BPF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BPF