Analysis of interatomic Contacts of Structural Units in PDB entry:
8BPG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BPG entry

There are 6 chains in PDB entry 8BPG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 20	SER 124
D	ILE 345	MET 568
C	ILE 345	MET 568
A	LEU 20	SER 124
E	ILE 345	MET 568
F	ILE 345	MET 568

There are 20 helices in PDB entry 8BPG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	69	73	Right-handed 310
Helix 2	AA2	D	353	361	Right-handed alpha
Helix 3	AA3	D	414	421	Right-handed alpha
Helix 4	AA4	D	462	466	Right-handed 310
Helix 5	AA5	D	496	498	Right-handed 310
Helix 6	AA6	D	524	530	Right-handed alpha
Helix 7	AA7	C	353	361	Right-handed alpha
Helix 8	AA8	C	414	420	Right-handed alpha
Helix 9	AA9	C	460	466	Right-handed alpha
Helix 10	AB1	C	525	530	Right-handed alpha
Helix 11	AB2	A	69	73	Right-handed 310
Helix 12	AB3	E	353	361	Right-handed alpha
Helix 13	AB4	E	414	421	Right-handed alpha
Helix 14	AB5	E	462	466	Right-handed 310
Helix 15	AB6	E	496	498	Right-handed 310
Helix 16	AB7	E	524	530	Right-handed alpha
Helix 17	AB8	F	353	361	Right-handed alpha
Helix 18	AB9	F	414	420	Right-handed alpha
Helix 19	AC1	F	460	466	Right-handed alpha
Helix 20	AC2	F	525	530	Right-handed alpha

There are 26 sheets in PDB entry 8BPG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	38	first strand
Strand 2	B	86	92	anti-parallel
Strand 3	B	76	81	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	104	106	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	350	first strand
Strand 2	D	364	370	anti-parallel
Strand 3	D	411	412	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	384	first strand
Strand 2	D	424	428	anti-parallel
Strand 3	D	437	441	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	400	first strand
Strand 2	D	404	405	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	457	first strand
Strand 2	D	470	479	anti-parallel
Strand 3	D	515	523	anti-parallel
Strand 4	D	500	502	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	457	first strand
Strand 2	D	470	479	anti-parallel
Strand 3	D	515	523	anti-parallel
Strand 4	D	506	507	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	493	494	first strand
Strand 2	D	485	490	anti-parallel
Strand 3	D	534	539	anti-parallel
Strand 4	D	549	552	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	350	first strand
Strand 2	C	366	370	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	383	first strand
Strand 2	C	424	429	anti-parallel
Strand 3	C	440	441	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	457	first strand
Strand 2	C	469	479	anti-parallel
Strand 3	C	515	524	anti-parallel
Strand 4	C	500	502	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	457	first strand
Strand 2	C	469	479	anti-parallel
Strand 3	C	515	524	anti-parallel
Strand 4	C	506	507	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	489	first strand
Strand 2	C	534	539	anti-parallel
Strand 3	C	548	552	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	38	first strand
Strand 2	A	86	92	anti-parallel
Strand 3	A	76	81	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	104	106	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	350	first strand
Strand 2	E	364	370	anti-parallel
Strand 3	E	411	412	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	380	384	first strand
Strand 2	E	424	428	anti-parallel
Strand 3	E	437	441	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	399	400	first strand
Strand 2	E	404	405	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	457	first strand
Strand 2	E	470	479	anti-parallel
Strand 3	E	515	523	anti-parallel
Strand 4	E	500	502	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	457	first strand
Strand 2	E	470	479	anti-parallel
Strand 3	E	515	523	anti-parallel
Strand 4	E	506	507	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	493	494	first strand
Strand 2	E	485	490	anti-parallel
Strand 3	E	534	539	anti-parallel
Strand 4	E	549	552	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	346	350	first strand
Strand 2	F	366	370	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	379	383	first strand
Strand 2	F	424	429	anti-parallel
Strand 3	F	440	441	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	453	457	first strand
Strand 2	F	469	479	anti-parallel
Strand 3	F	515	524	anti-parallel
Strand 4	F	500	502	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	453	457	first strand
Strand 2	F	469	479	anti-parallel
Strand 3	F	515	524	anti-parallel
Strand 4	F	506	507	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	485	489	first strand
Strand 2	F	534	539	anti-parallel
Strand 3	F	548	552	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BPG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BPG