Analysis of interatomic Contacts of Structural Units in PDB entry:
8BPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BPP entry

There are 3 chains in PDB entry 8BPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LEU 365
B
 GLU 4LEU 365
C
 GLU 4LEU 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8BPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
39 49Right-handed alpha
Helix 3
AA3
A
63 67Right-handed 310
Helix 4
AA4
A
77 94Right-handed alpha
Helix 5
AA5
A
114 118Right-handed 310
Helix 6
AA6
A
153 155Right-handed 310
Helix 7
AA7
A
156 174Right-handed alpha
Helix 8
AA8
A
187 192Right-handed alpha
Helix 9
AA9
A
207 212Right-handed alpha
Helix 10
AB1
A
212 226Right-handed alpha
Helix 11
AB2
A
227 229Right-handed 310
Helix 12
AB3
A
249 264Right-handed alpha
Helix 13
AB4
A
283 294Right-handed alpha
Helix 14
AB5
A
305 315Right-handed alpha
Helix 15
AB6
A
324 330Right-handed alpha
Helix 16
AB7
A
332 340Right-handed alpha
Helix 17
AB8
A
347 351Right-handed 310
Helix 18
AB9
B
4 8Right-handed 310
Helix 19
AC1
B
39 49Right-handed alpha
Helix 20
AC2
B
63 67Right-handed 310
Helix 21
AC3
B
77 94Right-handed alpha
Helix 22
AC4
B
114 118Right-handed 310
Helix 23
AC5
B
153 155Right-handed 310
Helix 24
AC6
B
156 174Right-handed alpha
Helix 25
AC7
B
187 192Right-handed alpha
Helix 26
AC8
B
207 212Right-handed alpha
Helix 27
AC9
B
212 226Right-handed alpha
Helix 28
AD1
B
227 229Right-handed 310
Helix 29
AD2
B
249 264Right-handed alpha
Helix 30
AD3
B
283 294Right-handed alpha
Helix 31
AD4
B
305 315Right-handed alpha
Helix 32
AD5
B
324 330Right-handed alpha
Helix 33
AD6
B
332 340Right-handed alpha
Helix 34
AD7
B
347 351Right-handed 310
Helix 35
AD8
C
4 8Right-handed 310
Helix 36
AD9
C
39 49Right-handed alpha
Helix 37
AE1
C
63 67Right-handed 310
Helix 38
AE2
C
77 94Right-handed alpha
Helix 39
AE3
C
114 118Right-handed 310
Helix 40
AE4
C
153 155Right-handed 310
Helix 41
AE5
C
156 174Right-handed alpha
Helix 42
AE6
C
187 192Right-handed alpha
Helix 43
AE7
C
207 212Right-handed alpha
Helix 44
AE8
C
212 226Right-handed alpha
Helix 45
AE9
C
227 229Right-handed 310
Helix 46
AF1
C
249 264Right-handed alpha
Helix 47
AF2
C
283 294Right-handed alpha
Helix 48
AF3
C
305 315Right-handed alpha
Helix 49
AF4
C
324 330Right-handed alpha
Helix 50
AF5
C
332 340Right-handed alpha
Helix 51
AF6
C
347 351Right-handed 310
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There are 12 sheets in PDB entry 8BPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
15 17anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
55 61parallel
Strand 3
A
98 103parallel
Strand 4
A
178 183parallel
Strand 5
A
231 235parallel
Strand 6
A
269 272parallel
Strand 7
A
298 301parallel
Strand 8
A
320 323parallel
Strand 9
A
21 23parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
150 151parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
141 145anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
15 17anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
55 61parallel
Strand 3
B
98 103parallel
Strand 4
B
178 183parallel
Strand 5
B
231 235parallel
Strand 6
B
269 272parallel
Strand 7
B
298 301parallel
Strand 8
B
320 323parallel
Strand 9
B
21 23parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
150 151parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 135first strand
Strand 2
B
141 145anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
15 17anti-parallel
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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 23first strand
Strand 2
C
55 61parallel
Strand 3
C
98 103parallel
Strand 4
C
178 183parallel
Strand 5
C
231 235parallel
Strand 6
C
269 272parallel
Strand 7
C
298 301parallel
Strand 8
C
320 323parallel
Strand 9
C
21 23parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 122first strand
Strand 2
C
150 151parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 135first strand
Strand 2
C
141 145anti-parallel
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