Analysis of interatomic Contacts of Structural Units in PDB entry:
8BPR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BPR entry

There are 9 chains in PDB entry 8BPR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 341
B	MET 1	PRO 341
C	PRO 4	GLY 48
D	PRO 4	VAL 194
E	LYS 9	VAL 194
F	PRO 4	ALA 167
G	LEU 14	GLY 228
X	G 1	C 21
Y	G 5	G 27

There are 59 helices in PDB entry 8BPR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	47	Right-handed alpha
Helix 2	AA2	A	54	58	Right-handed 310
Helix 3	AA3	A	100	107	Right-handed 310
Helix 4	AA4	A	114	122	Right-handed alpha
Helix 5	AA5	A	124	138	Right-handed alpha
Helix 6	AA6	A	141	163	Right-handed alpha
Helix 7	AA7	A	168	202	Right-handed alpha
Helix 8	AA8	A	220	227	Right-handed alpha
Helix 9	AA9	A	228	236	Right-handed alpha
Helix 10	AB1	A	241	245	Right-handed 310
Helix 11	AB2	A	261	285	Right-handed alpha
Helix 12	AB3	A	300	312	Right-handed alpha
Helix 13	AB4	B	35	47	Right-handed alpha
Helix 14	AB5	B	100	105	Right-handed alpha
Helix 15	AB6	B	114	117	Right-handed 310
Helix 16	AB7	B	118	123	Right-handed alpha
Helix 17	AB8	B	124	138	Right-handed alpha
Helix 18	AB9	B	141	163	Right-handed alpha
Helix 19	AC1	B	169	205	Right-handed alpha
Helix 20	AC2	B	220	227	Right-handed alpha
Helix 21	AC3	B	228	236	Right-handed alpha
Helix 22	AC4	B	241	245	Right-handed 310
Helix 23	AC5	B	256	260	Right-handed alpha
Helix 24	AC6	B	261	285	Right-handed alpha
Helix 25	AC7	B	300	312	Right-handed alpha
Helix 26	AC8	C	5	16	Right-handed alpha
Helix 27	AC9	C	22	35	Right-handed alpha
Helix 28	AD1	C	35	48	Right-handed alpha
Helix 29	AD2	D	5	17	Right-handed alpha
Helix 30	AD3	D	21	34	Right-handed alpha
Helix 31	AD4	D	35	47	Right-handed alpha
Helix 32	AD5	D	85	96	Right-handed alpha
Helix 33	AD6	D	125	129	Right-handed 310
Helix 34	AD7	D	142	153	Right-handed alpha
Helix 35	AD8	D	175	179	Right-handed 310
Helix 36	AD9	D	180	190	Right-handed alpha
Helix 37	AE1	E	10	17	Right-handed alpha
Helix 38	AE2	E	23	35	Right-handed alpha
Helix 39	AE3	E	35	50	Right-handed alpha
Helix 40	AE4	E	85	96	Right-handed alpha
Helix 41	AE5	E	110	114	Right-handed 310
Helix 42	AE6	E	121	127	Right-handed alpha
Helix 43	AE7	E	142	159	Right-handed alpha
Helix 44	AE8	E	180	190	Right-handed alpha
Helix 45	AE9	F	5	17	Right-handed alpha
Helix 46	AF1	F	21	35	Right-handed alpha
Helix 47	AF2	F	36	47	Right-handed alpha
Helix 48	AF3	F	85	96	Right-handed alpha
Helix 49	AF4	F	121	126	Right-handed alpha
Helix 50	AF5	F	127	129	Right-handed 310
Helix 51	AF6	F	142	160	Right-handed alpha
Helix 52	AF7	G	87	91	Right-handed 310
Helix 53	AF8	G	92	109	Right-handed alpha
Helix 54	AF9	G	114	132	Right-handed alpha
Helix 55	AG1	G	135	150	Right-handed alpha
Helix 56	AG2	G	175	189	Right-handed alpha
Helix 57	AG3	G	190	199	Right-handed alpha
Helix 58	AG4	G	206	219	Right-handed alpha
Helix 59	AG5	G	221	226	Right-handed 310

There are 13 sheets in PDB entry 8BPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	9	first strand
Strand 2	A	66	73	anti-parallel
Strand 3	A	78	85	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	113	first strand
Strand 2	A	289	293	parallel
Strand 3	A	317	321	parallel
Strand 4	A	25	29	parallel
Strand 5	A	331	334	parallel
Strand 6	A	337	339	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	97	99	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	246	251	anti-parallel
Strand 3	A	254	255	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	9	first strand
Strand 2	B	66	73	anti-parallel
Strand 3	B	78	85	anti-parallel
Strand 4	B	93	94	anti-parallel
Strand 5	B	97	98	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	113	first strand
Strand 2	B	289	293	parallel
Strand 3	B	316	321	parallel
Strand 4	B	24	29	parallel
Strand 5	B	331	334	parallel
Strand 6	B	337	339	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	214	first strand
Strand 2	B	246	251	anti-parallel
Strand 3	B	254	255	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	101	first strand
Strand 2	D	76	82	parallel
Strand 3	D	134	137	parallel
Strand 4	D	163	165	parallel
Strand 5	E	192	193	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	193	first strand
Strand 2	E	162	165	anti-parallel
Strand 3	E	134	138	parallel
Strand 4	E	79	83	parallel
Strand 5	E	101	104	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	61	62	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	101	104	first strand
Strand 2	F	80	83	parallel
Strand 3	F	135	137	parallel
Strand 4	F	163	164	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	24	first strand
Strand 2	G	30	36	anti-parallel
Strand 3	G	39	45	anti-parallel
Strand 4	G	77	83	parallel
Strand 5	G	63	69	anti-parallel
Strand 6	G	15	24	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	167	169	first strand
Strand 2	G	162	164	anti-parallel
Strand 3	G	173	174	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BPR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BPR