Analysis of interatomic Contacts of Structural Units in PDB entry:
8BPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BPS entry

There is 1 chain in PDB entry 8BPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1939SER 2253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8BPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1939 1946Right-handed alpha
Helix 2
AA2
A
1957 1961Right-handed 310
Helix 3
AA3
A
1962 1984Right-handed alpha
Helix 4
AA4
A
2002 2016Right-handed alpha
Helix 5
AA5
A
2035 2045Right-handed alpha
Helix 6
AA6
A
2058 2067Right-handed alpha
Helix 7
AA7
A
2081 2097Right-handed alpha
Helix 8
AA8
A
2113 2123Right-handed alpha
Helix 9
AA9
A
2124 2126Right-handed 310
Helix 10
AB1
A
2141 2151Right-handed alpha
Helix 11
AB2
A
2162 2168Right-handed alpha
Helix 12
AB3
A
2178 2182Right-handed 310
Helix 13
AB4
A
2184 2196Right-handed alpha
Helix 14
AB5
A
2198 2203Right-handed alpha
Helix 15
AB6
A
2222 2226Right-handed 310
Helix 16
AB7
A
2234 2253Right-handed alpha
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There are 2 sheets in PDB entry 8BPS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2019 2023first strand
Strand 2
A
1993 1998parallel
Strand 3
A
2049 2054parallel
Strand 4
A
2071 2076parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2154 2158first strand
Strand 2
A
2129 2133parallel
Strand 3
A
2103 2107parallel
Strand 4
A
2171 2174parallel
Strand 5
A
2210 2212parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il