Analysis of interatomic Contacts of Structural Units in PDB entry:
8BPZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BPZ entry

There is 1 chain in PDB entry 8BPZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LYS 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8BPZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 12Right-handed alpha
Helix 2
AA2
A
15 37Right-handed alpha
Helix 3
AA3
A
39 43Right-handed 310
Helix 4
AA4
A
44 55Right-handed alpha
Helix 5
AA5
A
59 80Right-handed alpha
Helix 6
AA6
A
94 101Right-handed alpha
Helix 7
AA7
A
110 121Right-handed alpha
Helix 8
AA8
A
123 136Right-handed alpha
Helix 9
AA9
A
139 141Right-handed 310
Helix 10
AB1
A
142 147Right-handed alpha
Helix 11
AB2
A
149 158Right-handed alpha
Helix 12
AB3
A
178 189Right-handed alpha
Helix 13
AB4
A
220 224Right-handed 310
Helix 14
AB5
A
231 247Right-handed alpha
Helix 15
AB6
A
252 273Right-handed alpha
Helix 16
AB7
A
276 287Right-handed alpha
Helix 17
AB8
A
293 302Right-handed alpha
Helix 18
AB9
A
306 314Right-handed alpha
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There are 2 sheets in PDB entry 8BPZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 166first strand
Strand 2
A
172 176anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
207 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il