Analysis of interatomic Contacts of Structural Units in PDB entry:
8BQ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BQ8 entry

There are 6 chains in PDB entry 8BQ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 316PRO 405
B
 GLY 315PRO 405
C
 PRO 313PRO 405
D
 PRO 148VAL 152
F
 PRO 191VAL 195
E
 ASN 256VAL 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8BQ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
357 363Right-handed alpha
Helix 2
AA2
A
383 393Right-handed alpha
Helix 3
AA3
B
357 363Right-handed alpha
Helix 4
AA4
B
383 393Right-handed alpha
Helix 5
AA5
C
357 363Right-handed alpha
Helix 6
AA6
C
383 393Right-handed alpha
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There are 6 sheets in PDB entry 8BQ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 323first strand
Strand 2
A
397 403anti-parallel
Strand 3
A
370 374anti-parallel
Strand 4
A
377 378anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 323first strand
Strand 2
A
397 403anti-parallel
Strand 3
A
370 374anti-parallel
Strand 4
A
348 353anti-parallel
Strand 5
A
331 335anti-parallel
Strand 6
D
150 152anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 323first strand
Strand 2
B
397 404anti-parallel
Strand 3
B
370 374anti-parallel
Strand 4
B
377 378anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 353first strand
Strand 2
B
331 335anti-parallel
Strand 3
E
259 260anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
316 323first strand
Strand 2
C
397 404anti-parallel
Strand 3
C
370 374anti-parallel
Strand 4
C
377 378anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
316 323first strand
Strand 2
C
397 404anti-parallel
Strand 3
C
370 374anti-parallel
Strand 4
C
348 353anti-parallel
Strand 5
C
331 335anti-parallel
Strand 6
F
193 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il