Analysis of interatomic Contacts of Structural Units in PDB entry:
8BQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BQB entry

There are 3 chains in PDB entry 8BQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8LYS 338
B
 SER 9ASN 337
C
 SER 9ASN 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8BQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 25Right-handed 310
Helix 2
AA2
A
56 63Right-handed alpha
Helix 3
AA3
A
67 77Right-handed alpha
Helix 4
AA4
A
87 113Right-handed alpha
Helix 5
AA5
A
134 138Right-handed 310
Helix 6
AA6
A
140 155Right-handed alpha
Helix 7
AA7
A
172 176Right-handed 310
Helix 8
AA8
A
181 200Right-handed alpha
Helix 9
AA9
A
209 214Right-handed alpha
Helix 10
AB1
A
216 222Right-handed alpha
Helix 11
AB2
A
243 252Right-handed alpha
Helix 12
AB3
A
253 258Right-handed 310
Helix 13
AB4
A
285 298Right-handed alpha
Helix 14
AB5
A
323 337Right-handed alpha
Helix 15
AB6
B
21 25Right-handed 310
Helix 16
AB7
B
56 63Right-handed alpha
Helix 17
AB8
B
67 77Right-handed alpha
Helix 18
AB9
B
87 113Right-handed alpha
Helix 19
AC1
B
134 138Right-handed 310
Helix 20
AC2
B
140 155Right-handed alpha
Helix 21
AC3
B
172 176Right-handed 310
Helix 22
AC4
B
181 200Right-handed alpha
Helix 23
AC5
B
209 214Right-handed alpha
Helix 24
AC6
B
216 222Right-handed alpha
Helix 25
AC7
B
243 252Right-handed alpha
Helix 26
AC8
B
253 258Right-handed 310
Helix 27
AC9
B
285 298Right-handed alpha
Helix 28
AD1
B
323 337Right-handed alpha
Helix 29
AD2
C
21 25Right-handed 310
Helix 30
AD3
C
56 63Right-handed alpha
Helix 31
AD4
C
67 77Right-handed alpha
Helix 32
AD5
C
87 113Right-handed alpha
Helix 33
AD6
C
134 138Right-handed 310
Helix 34
AD7
C
140 155Right-handed alpha
Helix 35
AD8
C
172 176Right-handed 310
Helix 36
AD9
C
181 200Right-handed alpha
Helix 37
AE1
C
209 214Right-handed alpha
Helix 38
AE2
C
216 222Right-handed alpha
Helix 39
AE3
C
243 252Right-handed alpha
Helix 40
AE4
C
253 258Right-handed 310
Helix 41
AE5
C
285 298Right-handed alpha
Helix 42
AE6
C
323 337Right-handed alpha
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There are 9 sheets in PDB entry 8BQB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
38 40anti-parallel
Strand 3
A
46 47anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
81 86parallel
Strand 3
A
116 121parallel
Strand 4
A
161 165parallel
Strand 5
A
204 208parallel
Strand 6
A
229 232parallel
Strand 7
A
261 266parallel
Strand 8
A
300 306parallel
Strand 9
A
50 54parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
124 126anti-parallel
Strand 3
A
169 170parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
38 40anti-parallel
Strand 3
B
46 47anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 54first strand
Strand 2
B
81 86parallel
Strand 3
B
116 121parallel
Strand 4
B
161 165parallel
Strand 5
B
204 208parallel
Strand 6
B
229 232parallel
Strand 7
B
261 266parallel
Strand 8
B
300 306parallel
Strand 9
B
50 54parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 132first strand
Strand 2
B
124 126anti-parallel
Strand 3
B
169 170parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 35first strand
Strand 2
C
38 40anti-parallel
Strand 3
C
46 47anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 54first strand
Strand 2
C
81 86parallel
Strand 3
C
116 121parallel
Strand 4
C
161 165parallel
Strand 5
C
204 208parallel
Strand 6
C
229 232parallel
Strand 7
C
261 266parallel
Strand 8
C
300 306parallel
Strand 9
C
50 54parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 132first strand
Strand 2
C
124 126anti-parallel
Strand 3
C
169 170parallel
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