Analysis of interatomic Contacts of Structural Units in PDB entry:
8BQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BQF entry

There are 6 chains in PDB entry 8BQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 213
B
 MET 1GLY 214
C
 MET 1GLY 214
D
 HIS 0GLY 214
E
 MET 1GLY 214
F
 HIS 0GLY 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 8BQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
31 41Right-handed alpha
Helix 3
AA3
A
46 48Right-handed 310
Helix 4
AA4
A
49 55Right-handed alpha
Helix 5
AA5
A
60 74Right-handed alpha
Helix 6
AA6
A
89 99Right-handed alpha
Helix 7
AA7
A
112 114Right-handed 310
Helix 8
AA8
A
115 121Right-handed alpha
Helix 9
AA9
A
156 159Right-handed 310
Helix 10
AB1
A
160 175Right-handed alpha
Helix 11
AB2
A
177 188Right-handed alpha
Helix 12
AB3
A
201 213Right-handed alpha
Helix 13
AB4
B
12 25Right-handed alpha
Helix 14
AB5
B
31 42Right-handed alpha
Helix 15
AB6
B
46 48Right-handed 310
Helix 16
AB7
B
49 55Right-handed alpha
Helix 17
AB8
B
60 75Right-handed alpha
Helix 18
AB9
B
76 80Right-handed 310
Helix 19
AC1
B
89 99Right-handed alpha
Helix 20
AC2
B
112 122Right-handed alpha
Helix 21
AC3
B
127 130Right-handed 310
Helix 22
AC4
B
156 159Right-handed 310
Helix 23
AC5
B
160 175Right-handed alpha
Helix 24
AC6
B
176 188Right-handed alpha
Helix 25
AC7
B
201 214Right-handed alpha
Helix 26
AC8
C
12 25Right-handed alpha
Helix 27
AC9
C
31 42Right-handed alpha
Helix 28
AD1
C
46 48Right-handed 310
Helix 29
AD2
C
49 55Right-handed alpha
Helix 30
AD3
C
60 74Right-handed alpha
Helix 31
AD4
C
89 99Right-handed alpha
Helix 32
AD5
C
112 114Right-handed 310
Helix 33
AD6
C
115 122Right-handed alpha
Helix 34
AD7
C
156 159Right-handed 310
Helix 35
AD8
C
160 175Right-handed alpha
Helix 36
AD9
C
176 188Right-handed alpha
Helix 37
AE1
C
201 214Right-handed alpha
Helix 38
AE2
D
12 25Right-handed alpha
Helix 39
AE3
D
31 41Right-handed alpha
Helix 40
AE4
D
46 48Right-handed 310
Helix 41
AE5
D
49 55Right-handed alpha
Helix 42
AE6
D
60 74Right-handed alpha
Helix 43
AE7
D
76 80Right-handed 310
Helix 44
AE8
D
89 99Right-handed alpha
Helix 45
AE9
D
112 114Right-handed 310
Helix 46
AF1
D
115 122Right-handed alpha
Helix 47
AF2
D
160 175Right-handed alpha
Helix 48
AF3
D
176 188Right-handed alpha
Helix 49
AF4
D
201 214Right-handed alpha
Helix 50
AF5
E
12 24Right-handed alpha
Helix 51
AF6
E
31 42Right-handed alpha
Helix 52
AF7
E
49 55Right-handed alpha
Helix 53
AF8
E
60 72Right-handed alpha
Helix 54
AF9
E
89 99Right-handed alpha
Helix 55
AG1
E
112 121Right-handed alpha
Helix 56
AG2
E
156 159Right-handed 310
Helix 57
AG3
E
160 175Right-handed alpha
Helix 58
AG4
E
176 188Right-handed alpha
Helix 59
AG5
E
201 213Right-handed alpha
Helix 60
AG6
F
12 25Right-handed alpha
Helix 61
AG7
F
31 42Right-handed alpha
Helix 62
AG8
F
46 48Right-handed 310
Helix 63
AG9
F
49 55Right-handed alpha
Helix 64
AH1
F
60 75Right-handed alpha
Helix 65
AH2
F
76 80Right-handed 310
Helix 66
AH3
F
89 99Right-handed alpha
Helix 67
AH4
F
112 114Right-handed 310
Helix 68
AH5
F
115 122Right-handed alpha
Helix 69
AH6
F
160 175Right-handed alpha
Helix 70
AH7
F
176 188Right-handed alpha
Helix 71
AH8
F
201 214Right-handed alpha
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There are 12 sheets in PDB entry 8BQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
81 84parallel
Strand 3
A
2 7parallel
Strand 4
A
105 110parallel
Strand 5
A
192 197parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 125first strand
Strand 2
A
132 134anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
81 84parallel
Strand 3
B
2 6parallel
Strand 4
B
105 110parallel
Strand 5
B
192 197parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 125first strand
Strand 2
B
132 134anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 30first strand
Strand 2
C
82 84parallel
Strand 3
C
3 6parallel
Strand 4
C
105 110parallel
Strand 5
C
192 197parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 125first strand
Strand 2
C
132 134anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 30first strand
Strand 2
D
83 84parallel
Strand 3
D
3 6parallel
Strand 4
D
105 110parallel
Strand 5
D
192 197parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
123 125first strand
Strand 2
D
132 134anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
28 30first strand
Strand 2
E
82 84parallel
Strand 3
E
3 6parallel
Strand 4
E
105 110parallel
Strand 5
E
192 197parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
123 125first strand
Strand 2
E
132 134anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
28 30first strand
Strand 2
F
81 84parallel
Strand 3
F
2 6parallel
Strand 4
F
105 110parallel
Strand 5
F
192 197parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
123 125first strand
Strand 2
F
132 134anti-parallel
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