Analysis of interatomic Contacts of Structural Units in PDB entry:
8BR0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BR0 entry

There are 4 chains in PDB entry 8BR0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	HIS 371
B	LYS 466	LEU 863
C	GLU 4	HIS 371
D	SER 464	THR 621

There are 86 helices in PDB entry 8BR0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	62	65	Right-handed 310
Helix 3	AA3	A	78	92	Right-handed alpha
Helix 4	AA4	A	97	101	Right-handed 310
Helix 5	AA5	A	112	126	Right-handed alpha
Helix 6	AA6	A	137	145	Right-handed alpha
Helix 7	AA7	A	172	175	Right-handed 310
Helix 8	AA8	A	181	194	Right-handed alpha
Helix 9	AA9	A	195	197	Right-handed 310
Helix 10	AB1	A	202	217	Right-handed alpha
Helix 11	AB2	A	222	233	Right-handed alpha
Helix 12	AB3	A	252	260	Right-handed alpha
Helix 13	AB4	A	261	262	Right-handed 310
Helix 14	AB5	A	263	268	Right-handed 310
Helix 15	AB6	A	273	284	Right-handed alpha
Helix 16	AB7	A	286	295	Right-handed alpha
Helix 17	AB8	A	301	305	Right-handed 310
Helix 18	AB9	A	308	321	Right-handed alpha
Helix 19	AC1	A	337	348	Right-handed alpha
Helix 20	AC2	A	349	353	Right-handed 310
Helix 21	AC3	A	359	366	Right-handed alpha
Helix 22	AC4	A	367	371	Right-handed 310
Helix 23	AC5	B	489	504	Right-handed alpha
Helix 24	AC6	B	513	515	Right-handed 310
Helix 25	AC7	B	516	522	Right-handed alpha
Helix 26	AC8	B	549	553	Right-handed 310
Helix 27	AC9	B	554	559	Right-handed alpha
Helix 28	AD1	B	560	574	Right-handed alpha
Helix 29	AD2	B	585	595	Right-handed alpha
Helix 30	AD3	B	676	678	Right-handed 310
Helix 31	AD4	B	679	683	Right-handed 310
Helix 32	AD5	B	689	697	Right-handed alpha
Helix 33	AD6	B	698	702	Right-handed 310
Helix 34	AD7	B	703	712	Right-handed alpha
Helix 35	AD8	B	712	720	Right-handed alpha
Helix 36	AD9	B	721	724	Right-handed 310
Helix 37	AE1	B	728	742	Right-handed alpha
Helix 38	AE2	B	755	759	Right-handed 310
Helix 39	AE3	B	763	768	Right-handed 310
Helix 40	AE4	B	775	780	Right-handed 310
Helix 41	AE5	B	790	795	Right-handed alpha
Helix 42	AE6	B	807	821	Right-handed alpha
Helix 43	AE7	B	828	833	Right-handed 310
Helix 44	AE8	B	847	862	Right-handed alpha
Helix 45	AE9	C	55	61	Right-handed alpha
Helix 46	AF1	C	78	92	Right-handed alpha
Helix 47	AF2	C	97	101	Right-handed 310
Helix 48	AF3	C	112	126	Right-handed alpha
Helix 49	AF4	C	137	144	Right-handed alpha
Helix 50	AF5	C	172	175	Right-handed 310
Helix 51	AF6	C	181	194	Right-handed alpha
Helix 52	AF7	C	195	197	Right-handed 310
Helix 53	AF8	C	202	217	Right-handed alpha
Helix 54	AF9	C	222	233	Right-handed alpha
Helix 55	AG1	C	252	260	Right-handed alpha
Helix 56	AG2	C	261	262	Right-handed 310
Helix 57	AG3	C	263	268	Right-handed 310
Helix 58	AG4	C	273	284	Right-handed alpha
Helix 59	AG5	C	286	295	Right-handed alpha
Helix 60	AG6	C	301	305	Right-handed 310
Helix 61	AG7	C	308	321	Right-handed alpha
Helix 62	AG8	C	337	348	Right-handed alpha
Helix 63	AG9	C	359	366	Right-handed alpha
Helix 64	AH1	C	367	371	Right-handed 310
Helix 65	AH2	D	489	504	Right-handed alpha
Helix 66	AH3	D	513	515	Right-handed 310
Helix 67	AH4	D	516	522	Right-handed alpha
Helix 68	AH5	D	549	553	Right-handed 310
Helix 69	AH6	D	554	559	Right-handed alpha
Helix 70	AH7	D	560	574	Right-handed alpha
Helix 71	AH8	D	585	595	Right-handed alpha
Helix 72	AH9	D	676	678	Right-handed 310
Helix 73	AI1	D	679	683	Right-handed 310
Helix 74	AI2	D	689	697	Right-handed alpha
Helix 75	AI3	D	698	702	Right-handed 310
Helix 76	AI4	D	703	712	Right-handed alpha
Helix 77	AI5	D	712	720	Right-handed alpha
Helix 78	AI6	D	721	725	Right-handed 310
Helix 79	AI7	D	728	742	Right-handed alpha
Helix 80	AI8	D	755	759	Right-handed 310
Helix 81	AI9	D	763	768	Right-handed 310
Helix 82	AJ1	D	775	780	Right-handed 310
Helix 83	AJ2	D	790	795	Right-handed alpha
Helix 84	AJ3	D	807	821	Right-handed alpha
Helix 85	AJ4	D	828	833	Right-handed 310
Helix 86	AJ5	D	847	861	Right-handed alpha

There are 22 sheets in PDB entry 8BR0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	37	anti-parallel
Strand 3	A	66	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	470	first strand
Strand 2	B	473	475	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	796	797	first strand
Strand 2	B	803	805	anti-parallel
Strand 3	B	770	773	anti-parallel
Strand 4	B	505	509	anti-parallel
Strand 5	B	668	674	anti-parallel
Strand 6	B	823	824	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	578	581	first strand
Strand 2	B	651	654	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	584	first strand
Strand 2	B	634	643	anti-parallel
Strand 3	B	621	631	anti-parallel
Strand 4	B	611	616	anti-parallel
Strand 5	B	603	604	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	584	first strand
Strand 2	B	634	643	anti-parallel
Strand 3	B	646	649	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	468	470	first strand
Strand 2	D	473	475	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	796	797	first strand
Strand 2	D	803	805	anti-parallel
Strand 3	D	770	773	anti-parallel
Strand 4	D	505	509	anti-parallel
Strand 5	D	668	674	anti-parallel
Strand 6	D	823	824	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	578	581	first strand
Strand 2	D	651	654	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	583	584	first strand
Strand 2	D	634	643	anti-parallel
Strand 3	D	621	631	anti-parallel
Strand 4	D	611	616	anti-parallel
Strand 5	D	603	604	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	583	584	first strand
Strand 2	D	634	643	anti-parallel
Strand 3	D	646	649	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BR0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BR0