Analysis of interatomic Contacts of Structural Units in PDB entry:
8BR1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BR1 entry

There are 4 chains in PDB entry 8BR1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	HIS 371
C	GLU 4	HIS 371
B	LYS 466	LEU 863
D	LYS 466	ASN 617

There are 88 helices in PDB entry 8BR1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	126	Right-handed alpha
Helix 5	AA5	A	137	145	Right-handed alpha
Helix 6	AA6	A	172	175	Right-handed 310
Helix 7	AA7	A	181	194	Right-handed alpha
Helix 8	AA8	A	195	197	Right-handed 310
Helix 9	AA9	A	202	217	Right-handed alpha
Helix 10	AB1	A	222	233	Right-handed alpha
Helix 11	AB2	A	252	260	Right-handed alpha
Helix 12	AB3	A	261	262	Right-handed 310
Helix 13	AB4	A	263	268	Right-handed 310
Helix 14	AB5	A	273	284	Right-handed alpha
Helix 15	AB6	A	286	295	Right-handed alpha
Helix 16	AB7	A	301	305	Right-handed 310
Helix 17	AB8	A	308	321	Right-handed alpha
Helix 18	AB9	A	334	336	Right-handed 310
Helix 19	AC1	A	337	348	Right-handed alpha
Helix 20	AC2	A	349	353	Right-handed 310
Helix 21	AC3	A	359	366	Right-handed alpha
Helix 22	AC4	A	367	371	Right-handed 310
Helix 23	AC5	C	55	61	Right-handed alpha
Helix 24	AC6	C	78	92	Right-handed alpha
Helix 25	AC7	C	97	101	Right-handed 310
Helix 26	AC8	C	112	126	Right-handed alpha
Helix 27	AC9	C	137	145	Right-handed alpha
Helix 28	AD1	C	172	175	Right-handed 310
Helix 29	AD2	C	181	194	Right-handed alpha
Helix 30	AD3	C	195	197	Right-handed 310
Helix 31	AD4	C	202	217	Right-handed alpha
Helix 32	AD5	C	222	233	Right-handed alpha
Helix 33	AD6	C	252	260	Right-handed alpha
Helix 34	AD7	C	261	262	Right-handed 310
Helix 35	AD8	C	263	268	Right-handed 310
Helix 36	AD9	C	273	284	Right-handed alpha
Helix 37	AE1	C	286	295	Right-handed alpha
Helix 38	AE2	C	301	305	Right-handed 310
Helix 39	AE3	C	308	321	Right-handed alpha
Helix 40	AE4	C	334	336	Right-handed 310
Helix 41	AE5	C	337	349	Right-handed alpha
Helix 42	AE6	C	350	353	Right-handed 310
Helix 43	AE7	C	359	366	Right-handed alpha
Helix 44	AE8	C	367	371	Right-handed 310
Helix 45	AE9	B	489	504	Right-handed alpha
Helix 46	AF1	B	513	515	Right-handed 310
Helix 47	AF2	B	516	522	Right-handed alpha
Helix 48	AF3	B	549	553	Right-handed 310
Helix 49	AF4	B	554	560	Right-handed alpha
Helix 50	AF5	B	560	574	Right-handed alpha
Helix 51	AF6	B	585	594	Right-handed alpha
Helix 52	AF7	B	676	678	Right-handed 310
Helix 53	AF8	B	679	682	Right-handed 310
Helix 54	AF9	B	689	697	Right-handed alpha
Helix 55	AG1	B	698	702	Right-handed 310
Helix 56	AG2	B	703	712	Right-handed alpha
Helix 57	AG3	B	712	720	Right-handed alpha
Helix 58	AG4	B	721	724	Right-handed 310
Helix 59	AG5	B	729	742	Right-handed alpha
Helix 60	AG6	B	755	759	Right-handed 310
Helix 61	AG7	B	763	768	Right-handed 310
Helix 62	AG8	B	775	780	Right-handed 310
Helix 63	AG9	B	790	795	Right-handed alpha
Helix 64	AH1	B	807	821	Right-handed alpha
Helix 65	AH2	B	828	833	Right-handed 310
Helix 66	AH3	B	847	861	Right-handed alpha
Helix 67	AH4	D	489	504	Right-handed alpha
Helix 68	AH5	D	513	515	Right-handed 310
Helix 69	AH6	D	516	522	Right-handed alpha
Helix 70	AH7	D	549	553	Right-handed 310
Helix 71	AH8	D	554	560	Right-handed alpha
Helix 72	AH9	D	560	574	Right-handed alpha
Helix 73	AI1	D	585	594	Right-handed alpha
Helix 74	AI2	D	676	678	Right-handed 310
Helix 75	AI3	D	679	682	Right-handed 310
Helix 76	AI4	D	689	697	Right-handed alpha
Helix 77	AI5	D	698	702	Right-handed 310
Helix 78	AI6	D	703	712	Right-handed alpha
Helix 79	AI7	D	712	720	Right-handed alpha
Helix 80	AI8	D	721	725	Right-handed 310
Helix 81	AI9	D	729	742	Right-handed alpha
Helix 82	AJ1	D	755	759	Right-handed 310
Helix 83	AJ2	D	763	768	Right-handed 310
Helix 84	AJ3	D	775	780	Right-handed 310
Helix 85	AJ4	D	790	795	Right-handed alpha
Helix 86	AJ5	D	807	821	Right-handed alpha
Helix 87	AJ6	D	828	833	Right-handed 310
Helix 88	AJ7	D	847	861	Right-handed alpha

There are 24 sheets in PDB entry 8BR1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	470	first strand
Strand 2	B	473	475	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	796	797	first strand
Strand 2	B	803	805	anti-parallel
Strand 3	B	770	773	anti-parallel
Strand 4	B	505	509	anti-parallel
Strand 5	B	668	674	anti-parallel
Strand 6	B	823	824	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	578	581	first strand
Strand 2	B	651	654	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	584	first strand
Strand 2	B	634	642	anti-parallel
Strand 3	B	621	631	anti-parallel
Strand 4	B	611	616	anti-parallel
Strand 5	B	603	604	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	584	first strand
Strand 2	B	634	642	anti-parallel
Strand 3	B	647	649	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	684	685	first strand
Strand 2	B	727	728	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	468	470	first strand
Strand 2	D	473	475	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	796	797	first strand
Strand 2	D	803	805	anti-parallel
Strand 3	D	770	773	anti-parallel
Strand 4	D	505	509	anti-parallel
Strand 5	D	668	674	anti-parallel
Strand 6	D	823	824	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	578	581	first strand
Strand 2	D	651	654	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	583	584	first strand
Strand 2	D	634	643	anti-parallel
Strand 3	D	621	631	anti-parallel
Strand 4	D	611	616	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	583	584	first strand
Strand 2	D	634	643	anti-parallel
Strand 3	D	646	649	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	684	685	first strand
Strand 2	D	727	728	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BR1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BR1