Analysis of interatomic Contacts of Structural Units in PDB entry:
8BRD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BRD entry

There are 7 chains in PDB entry 8BRD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3ASP 252
E
 MET 20ASP 252
D
 MET 1ASN 243
C
 MET 1ILE 251
B
 MET 20ASP 252
F
 PRO 11GLN 61
G
 PRO 11GLN 61
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8BRD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 21Right-handed alpha
Helix 2
AA2
A
25 29Right-handed 310
Helix 3
AA3
A
31 48Right-handed alpha
Helix 4
AA4
A
51 68Right-handed alpha
Helix 5
AA5
A
74 91Right-handed alpha
Helix 6
AA6
A
92 95Right-handed 310
Helix 7
AA7
A
102 115Right-handed alpha
Helix 8
AA8
A
117 167Right-handed alpha
Helix 9
AA9
A
174 196Right-handed alpha
Helix 10
AB1
A
196 228Right-handed alpha
Helix 11
AB2
A
230 240Right-handed alpha
Helix 12
AB3
A
241 244Right-handed 310
Helix 13
AB4
A
246 251Right-handed alpha
Helix 14
AB5
E
25 29Right-handed 310
Helix 15
AB6
E
31 48Right-handed alpha
Helix 16
AB7
E
51 68Right-handed alpha
Helix 17
AB8
E
72 91Right-handed alpha
Helix 18
AB9
E
102 113Right-handed alpha
Helix 19
AC1
E
117 168Right-handed alpha
Helix 20
AC2
E
171 196Right-handed alpha
Helix 21
AC3
E
196 227Right-handed alpha
Helix 22
AC4
E
230 243Right-handed alpha
Helix 23
AC5
E
244 250Right-handed 310
Helix 24
AC6
D
2 23Right-handed alpha
Helix 25
AC7
D
26 30Right-handed 310
Helix 26
AC8
D
31 47Right-handed alpha
Helix 27
AC9
D
51 64Right-handed alpha
Helix 28
AD1
D
72 90Right-handed alpha
Helix 29
AD2
D
92 98Right-handed 310
Helix 30
AD3
D
102 114Right-handed alpha
Helix 31
AD4
D
117 168Right-handed alpha
Helix 32
AD5
D
174 196Right-handed alpha
Helix 33
AD6
D
196 228Right-handed alpha
Helix 34
AD7
D
230 243Right-handed alpha
Helix 35
AD8
C
2 24Right-handed alpha
Helix 36
AD9
C
31 50Right-handed alpha
Helix 37
AE1
C
51 68Right-handed alpha
Helix 38
AE2
C
72 91Right-handed alpha
Helix 39
AE3
C
92 97Right-handed 310
Helix 40
AE4
C
102 114Right-handed alpha
Helix 41
AE5
C
117 168Right-handed alpha
Helix 42
AE6
C
175 196Right-handed alpha
Helix 43
AE7
C
196 228Right-handed alpha
Helix 44
AE8
C
230 245Right-handed alpha
Helix 45
AE9
C
247 251Right-handed 310
Helix 46
AF1
B
31 50Right-handed alpha
Helix 47
AF2
B
51 68Right-handed alpha
Helix 48
AF3
B
72 90Right-handed alpha
Helix 49
AF4
B
93 98Right-handed 310
Helix 50
AF5
B
102 114Right-handed alpha
Helix 51
AF6
B
117 168Right-handed alpha
Helix 52
AF7
B
171 196Right-handed alpha
Helix 53
AF8
B
196 228Right-handed alpha
Helix 54
AF9
B
230 240Right-handed alpha
Helix 55
AG1
B
241 244Right-handed 310
Helix 56
AG2
B
245 251Right-handed alpha
Helix 57
AG3
F
16 39Right-handed alpha
Helix 58
AG4
F
43 58Right-handed alpha
Helix 59
AG5
G
18 39Right-handed alpha
Helix 60
AG6
G
43 58Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8BRD.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
40 42first strand
Strand 2
G
40 42anti-parallel
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