Analysis of interatomic Contacts of Structural Units in PDB entry:
8BRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BRJ entry

There are 3 chains in PDB entry 8BRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 436
B
 MET 1GLU 436
C
 MET 1PHE 493
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 67 helices in PDB entry 8BRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 50Right-handed alpha
Helix 2
AA2
A
55 59Right-handed 310
Helix 3
AA3
A
75 84Right-handed alpha
Helix 4
AA4
A
100 115Right-handed alpha
Helix 5
AA5
A
138 149Right-handed alpha
Helix 6
AA6
A
152 161Right-handed alpha
Helix 7
AA7
A
185 196Right-handed alpha
Helix 8
AA8
A
204 211Right-handed alpha
Helix 9
AA9
A
213 220Right-handed alpha
Helix 10
AB1
A
222 226Right-handed 310
Helix 11
AB2
A
286 294Right-handed alpha
Helix 12
AB3
A
317 331Right-handed alpha
Helix 13
AB4
A
349 359Right-handed alpha
Helix 14
AB5
A
359 366Right-handed alpha
Helix 15
AB6
A
386 391Right-handed alpha
Helix 16
AB7
A
393 412Right-handed alpha
Helix 17
AB8
B
36 53Right-handed alpha
Helix 18
AB9
B
55 59Right-handed 310
Helix 19
AC1
B
75 84Right-handed alpha
Helix 20
AC2
B
100 116Right-handed alpha
Helix 21
AC3
B
137 150Right-handed alpha
Helix 22
AC4
B
152 160Right-handed alpha
Helix 23
AC5
B
183 196Right-handed alpha
Helix 24
AC6
B
198 220Right-handed alpha
Helix 25
AC7
B
249 255Right-handed alpha
Helix 26
AC8
B
286 294Right-handed alpha
Helix 27
AC9
B
317 331Right-handed alpha
Helix 28
AD1
B
346 358Right-handed alpha
Helix 29
AD2
B
359 366Right-handed alpha
Helix 30
AD3
B
386 391Right-handed alpha
Helix 31
AD4
B
395 412Right-handed alpha
Helix 32
AD5
C
32 48Right-handed alpha
Helix 33
AD6
C
71 76Right-handed alpha
Helix 34
AD7
C
79 99Right-handed alpha
Helix 35
AD8
C
114 123Right-handed alpha
Helix 36
AD9
C
140 144Right-handed 310
Helix 37
AE1
C
150 159Right-handed alpha
Helix 38
AE2
C
160 170Right-handed alpha
Helix 39
AE3
C
175 183Right-handed alpha
Helix 40
AE4
C
193 204Right-handed alpha
Helix 41
AE5
C
224 241Right-handed alpha
Helix 42
AE6
C
247 260Right-handed alpha
Helix 43
AE7
C
261 278Right-handed alpha
Helix 44
AE8
C
279 298Right-handed alpha
Helix 45
AE9
C
317 330Right-handed alpha
Helix 46
AF1
C
341 362Right-handed alpha
Helix 47
AF2
C
366 375Right-handed alpha
Helix 48
AF3
C
385 389Right-handed 310
Helix 49
AF4
C
399 413Right-handed alpha
Helix 50
AF5
C
428 434Right-handed alpha
Helix 51
AF6
C
438 440Right-handed 310
Helix 52
AF7
C
466 480Right-handed alpha
Helix 53
AF8
C
494 512Right-handed alpha
Helix 54
AF9
C
515 526Right-handed alpha
Helix 55
AG1
C
531 540Right-handed alpha
Helix 56
AG2
C
540 545Right-handed alpha
Helix 57
AG3
C
547 556Right-handed alpha
Helix 58
AG4
C
557 560Right-handed 310
Helix 59
AG5
C
565 571Right-handed alpha
Helix 60
AG6
C
600 605Right-handed alpha
Helix 61
AG7
C
614 636Right-handed alpha
Helix 62
AG8
C
641 652Right-handed alpha
Helix 63
AG9
C
656 660Right-handed 310
Helix 64
AH1
C
661 670Right-handed alpha
Helix 65
AH2
C
671 686Right-handed alpha
Helix 66
AH3
C
687 690Right-handed 310
Helix 67
AH4
C
692 702Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8BRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 22first strand
Strand 2
A
276 285anti-parallel
Strand 3
A
120 127anti-parallel
Strand 4
A
61 65parallel
Strand 5
A
91 96parallel
Strand 6
B
92 96anti-parallel
Strand 7
B
61 66parallel
Strand 8
B
120 127parallel
Strand 9
B
276 285anti-parallel
Strand 10
B
20 22anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
276 285anti-parallel
Strand 3
A
120 127anti-parallel
Strand 4
A
61 65parallel
Strand 5
A
91 96parallel
Strand 6
B
92 96anti-parallel
Strand 7
B
61 66parallel
Strand 8
B
120 127parallel
Strand 9
B
276 285anti-parallel
Strand 10
B
26 27anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 308first strand
Strand 2
A
427 434anti-parallel
Strand 3
A
418 423anti-parallel
Strand 4
A
341 342parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 308first strand
Strand 2
B
427 433anti-parallel
Strand 3
B
417 423anti-parallel
Strand 4
B
339 342parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 11first strand
Strand 2
C
16 19anti-parallel
Strand 3
C
54 58parallel
Strand 4
C
103 108parallel
Strand 5
C
125 129parallel
Strand 6
C
187 189parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 31first strand
Strand 2
C
68 69parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 66first strand
Strand 2
C
111 113parallel
Strand 3
C
135 137parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
377 379first strand
Strand 2
C
335 337parallel
Strand 3
C
311 314parallel
Strand 4
C
391 394parallel
Strand 5
C
419 422parallel
Strand 6
C
442 446parallel
Strand 7
C
456 460anti-parallel
Strand 8
C
483 486parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il