Analysis of interatomic Contacts of Structural Units in PDB entry:
8BRP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BRP entry

There are 4 chains in PDB entry 8BRP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2VAL 306
B
 LYS 3VAL 306
C
 LYS 3VAL 306
D
 ALA 2LEU 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 61 helices in PDB entry 8BRP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 25Right-handed alpha
Helix 2
AA2
A
52 57Right-handed alpha
Helix 3
AA3
A
59 68Right-handed alpha
Helix 4
AA4
A
77 83Right-handed alpha
Helix 5
AA5
A
112 114Right-handed 310
Helix 6
AA6
A
125 129Right-handed 310
Helix 7
AA7
A
149 157Right-handed alpha
Helix 8
AA8
A
167 169Right-handed 310
Helix 9
AA9
A
172 178Right-handed alpha
Helix 10
AB1
A
184 194Right-handed alpha
Helix 11
AB2
A
197 204Right-handed alpha
Helix 12
AB3
A
224 228Right-handed 310
Helix 13
AB4
A
234 252Right-handed alpha
Helix 14
AB5
A
274 287Right-handed alpha
Helix 15
AB6
A
297 306Right-handed alpha
Helix 16
AB7
B
11 13Right-handed 310
Helix 17
AB8
B
14 26Right-handed alpha
Helix 18
AB9
B
52 57Right-handed alpha
Helix 19
AC1
B
59 68Right-handed alpha
Helix 20
AC2
B
77 83Right-handed alpha
Helix 21
AC3
B
112 114Right-handed 310
Helix 22
AC4
B
125 129Right-handed 310
Helix 23
AC5
B
149 157Right-handed alpha
Helix 24
AC6
B
167 169Right-handed 310
Helix 25
AC7
B
172 178Right-handed alpha
Helix 26
AC8
B
184 194Right-handed alpha
Helix 27
AC9
B
197 203Right-handed alpha
Helix 28
AD1
B
234 252Right-handed alpha
Helix 29
AD2
B
274 287Right-handed alpha
Helix 30
AD3
B
297 306Right-handed alpha
Helix 31
AD4
C
11 13Right-handed 310
Helix 32
AD5
C
14 26Right-handed alpha
Helix 33
AD6
C
52 57Right-handed alpha
Helix 34
AD7
C
59 68Right-handed alpha
Helix 35
AD8
C
76 83Right-handed alpha
Helix 36
AD9
C
112 114Right-handed 310
Helix 37
AE1
C
125 129Right-handed 310
Helix 38
AE2
C
149 157Right-handed alpha
Helix 39
AE3
C
167 169Right-handed 310
Helix 40
AE4
C
172 178Right-handed alpha
Helix 41
AE5
C
184 194Right-handed alpha
Helix 42
AE6
C
197 204Right-handed alpha
Helix 43
AE7
C
234 252Right-handed alpha
Helix 44
AE8
C
274 287Right-handed alpha
Helix 45
AE9
C
297 306Right-handed alpha
Helix 46
AF1
D
11 13Right-handed 310
Helix 47
AF2
D
14 26Right-handed alpha
Helix 48
AF3
D
55 58Right-handed 310
Helix 49
AF4
D
59 70Right-handed alpha
Helix 50
AF5
D
76 83Right-handed alpha
Helix 51
AF6
D
112 114Right-handed 310
Helix 52
AF7
D
125 129Right-handed 310
Helix 53
AF8
D
149 157Right-handed alpha
Helix 54
AF9
D
167 169Right-handed 310
Helix 55
AG1
D
172 177Right-handed alpha
Helix 56
AG2
D
184 194Right-handed alpha
Helix 57
AG3
D
197 202Right-handed alpha
Helix 58
AG4
D
224 228Right-handed 310
Helix 59
AG5
D
234 252Right-handed alpha
Helix 60
AG6
D
274 287Right-handed alpha
Helix 61
AG7
D
297 305Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8BRP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 121first strand
Strand 2
A
104 110anti-parallel
Strand 3
A
135 142anti-parallel
Strand 4
A
86 92parallel
Strand 5
A
33 38parallel
Strand 6
A
160 165parallel
Strand 7
A
258 262parallel
Strand 8
A
6 9parallel
Strand 9
A
295 296parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 183first strand
Strand 2
A
215 220anti-parallel
Strand 3
A
207 212anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 121first strand
Strand 2
B
104 110anti-parallel
Strand 3
B
135 142anti-parallel
Strand 4
B
86 92parallel
Strand 5
B
33 38parallel
Strand 6
B
160 165parallel
Strand 7
B
258 262parallel
Strand 8
B
6 9parallel
Strand 9
B
294 296parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 183first strand
Strand 2
B
215 221anti-parallel
Strand 3
B
208 212anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 121first strand
Strand 2
C
104 110anti-parallel
Strand 3
C
135 142anti-parallel
Strand 4
C
86 92parallel
Strand 5
C
33 38parallel
Strand 6
C
160 165parallel
Strand 7
C
258 262parallel
Strand 8
C
6 9parallel
Strand 9
C
295 296parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
180 183first strand
Strand 2
C
215 219anti-parallel
Strand 3
C
208 212anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 121first strand
Strand 2
D
104 110anti-parallel
Strand 3
D
135 142anti-parallel
Strand 4
D
86 92parallel
Strand 5
D
33 38parallel
Strand 6
D
160 165parallel
Strand 7
D
258 262parallel
Strand 8
D
4 9parallel
Strand 9
D
292 296parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
179 183first strand
Strand 2
D
215 221anti-parallel
Strand 3
D
208 212anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il