Analysis of interatomic Contacts of Structural Units in PDB entry:
8BRQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BRQ entry

There are 2 chains in PDB entry 8BRQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2GLN 197
B
 SER 1LEU 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 8BRQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 54Right-handed alpha
Helix 2
AA2
A
56 61Right-handed alpha
Helix 3
AA3
A
64 75Right-handed alpha
Helix 4
AA4
A
77 87Right-handed alpha
Helix 5
AA5
A
89 113Right-handed alpha
Helix 6
AA6
A
113 118Right-handed alpha
Helix 7
AA7
A
119 126Right-handed alpha
Helix 8
AA8
A
133 146Right-handed alpha
Helix 9
AA9
A
147 149Right-handed 310
Helix 10
AB1
A
152 169Right-handed alpha
Helix 11
AB2
A
169 181Right-handed alpha
Helix 12
AB3
A
193 197Right-handed 310
Helix 13
AB4
B
135 137Right-handed 310
Helix 14
AB5
B
150 164Right-handed alpha
Helix 15
AB6
B
166 177Right-handed alpha
Helix 16
AB7
B
226 230Right-handed 310
Helix 17
AB8
B
254 261Right-handed 310
Helix 18
AB9
B
267 276Right-handed alpha
Helix 19
AC1
B
281 295Right-handed alpha
Helix 20
AC2
B
298 313Right-handed alpha
Helix 21
AC3
B
317 330Right-handed alpha
Helix 22
AC4
B
346 368Right-handed alpha
Helix 23
AC5
B
370 379Right-handed alpha
Helix 24
AC6
B
384 393Right-handed alpha
Helix 25
AC7
B
402 425Right-handed alpha
Helix 26
AC8
B
428 433Right-handed 310
Helix 27
AC9
B
505 512Right-handed alpha
Helix 28
AD1
B
520 525Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8BRQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
9 13anti-parallel
Strand 3
A
19 22anti-parallel
Strand 4
B
32 39parallel
Strand 5
B
42 49anti-parallel
Strand 6
B
57 60anti-parallel
Strand 7
B
63 69anti-parallel
Strand 8
B
181 187anti-parallel
Strand 9
B
192 197anti-parallel
Strand 10
B
232 234anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 243first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
17 21anti-parallel
Strand 4
B
468 473anti-parallel
Strand 5
B
478 483anti-parallel
Strand 6
B
515 516anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 98first strand
Strand 2
B
86 92anti-parallel
Strand 3
B
75 83anti-parallel
Strand 4
B
139 145anti-parallel
Strand 5
B
128 134anti-parallel
Strand 6
B
115 125anti-parallel
Strand 7
B
100 109anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 98first strand
Strand 2
B
86 92anti-parallel
Strand 3
B
75 83anti-parallel
Strand 4
B
213 214parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
438 439first strand
Strand 2
B
459 460anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il