Analysis of interatomic Contacts of Structural Units in PDB entry:
8BS3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BS3 entry

There are 2 chains in PDB entry 8BS3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 101PRO 424
B
 MET 1GLY 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8BS3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
130 142Right-handed alpha
Helix 2
AA2
A
143 152Right-handed alpha
Helix 3
AA3
A
165 180Right-handed alpha
Helix 4
AA4
A
187 193Right-handed alpha
Helix 5
AA5
A
193 198Right-handed alpha
Helix 6
AA6
A
208 226Right-handed alpha
Helix 7
AA7
A
232 237Right-handed alpha
Helix 8
AA8
A
239 246Right-handed alpha
Helix 9
AA9
A
280 289Right-handed alpha
Helix 10
AB1
A
295 299Right-handed 310
Helix 11
AB2
A
352 355Right-handed 310
Helix 12
AB3
A
406 411Right-handed alpha
Helix 13
AB4
B
20 33Right-handed alpha
Helix 14
AB5
B
35 37Right-handed 310
Helix 15
AB6
B
53 58Right-handed alpha
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There are 6 sheets in PDB entry 8BS3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
184 185parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 268first strand
Strand 2
A
247 255anti-parallel
Strand 3
A
311 319anti-parallel
Strand 4
A
292 294anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
A
323 328parallel
Strand 3
A
415 423anti-parallel
Strand 4
A
364 374anti-parallel
Strand 5
A
348 350anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
A
323 328parallel
Strand 3
A
415 423anti-parallel
Strand 4
A
364 374anti-parallel
Strand 5
A
382 388anti-parallel
Strand 6
A
394 398anti-parallel
Strand 7
A
401 405anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 302first strand
Strand 2
A
307 309anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
64 69parallel
Strand 4
B
39 43anti-parallel
Strand 5
B
46 47anti-parallel
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