Analysis of interatomic Contacts of Structural Units in PDB entry:
8BS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BS8 entry

There are 2 chains in PDB entry 8BS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 ALA 28CYS 298
L
 GLN 29SER 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8BS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
91 93Right-handed 310
Helix 2
AA2
H
101 103Right-handed 310
Helix 3
AA3
H
114 118Right-handed 310
Helix 4
AA4
H
167 171Right-handed 310
Helix 5
AA5
H
211 214Right-handed 310
Helix 6
AA6
H
240 242Right-handed 310
Helix 7
AA7
H
284 287Right-handed 310
Helix 8
AA8
L
56 60Right-handed 310
Helix 9
AA9
L
108 112Right-handed 310
Helix 10
AB1
L
153 158Right-handed alpha
Helix 11
AB2
L
214 219Right-handed alpha
Helix 12
AB3
L
239 244Right-handed alpha
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There are 13 sheets in PDB entry 8BS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
31 35first strand
Strand 2
H
46 53anti-parallel
Strand 3
H
105 110anti-parallel
Strand 4
H
95 100anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
39 40first strand
Strand 2
H
191 195parallel
Strand 3
H
119 133anti-parallel
Strand 4
H
62 67anti-parallel
Strand 5
H
73 79anti-parallel
Strand 6
H
85 87anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
39 40first strand
Strand 2
H
191 195parallel
Strand 3
H
119 133anti-parallel
Strand 4
H
177 187anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
156 158first strand
Strand 2
H
172 174anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
204 209first strand
Strand 2
H
219 229anti-parallel
Strand 3
H
260 269anti-parallel
Strand 4
H
247 249anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
204 209first strand
Strand 2
H
219 229anti-parallel
Strand 3
H
260 269anti-parallel
Strand 4
H
253 254anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
235 238first strand
Strand 2
H
277 283anti-parallel
Strand 3
H
288 294anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
37 41first strand
Strand 2
L
133 138parallel
Strand 3
L
113 120anti-parallel
Strand 4
L
63 67anti-parallel
Strand 5
L
74 78anti-parallel
Strand 6
L
82 83anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
37 41first strand
Strand 2
L
133 138parallel
Strand 3
L
113 120anti-parallel
Strand 4
L
127 129anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
46 51first strand
Strand 2
L
99 104anti-parallel
Strand 3
L
91 96anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
146 150first strand
Strand 2
L
161 171anti-parallel
Strand 3
L
204 213anti-parallel
Strand 4
L
191 193anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
146 150first strand
Strand 2
L
161 171anti-parallel
Strand 3
L
204 213anti-parallel
Strand 4
L
197 198anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
185 187first strand
Strand 2
L
177 182anti-parallel
Strand 3
L
223 229anti-parallel
Strand 4
L
232 238anti-parallel
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