Analysis of interatomic Contacts of Structural Units in PDB entry:
8BS9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BS9 entry

There are 4 chains in PDB entry 8BS9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 101	PRO 424
B	MET 1	GLY 75
C	GLN 101	PRO 424
D	MET 1	GLY 75

There are 30 helices in PDB entry 8BS9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	130	142	Right-handed alpha
Helix 2	AA2	A	143	152	Right-handed alpha
Helix 3	AA3	A	165	179	Right-handed alpha
Helix 4	AA4	A	187	193	Right-handed alpha
Helix 5	AA5	A	193	198	Right-handed alpha
Helix 6	AA6	A	209	226	Right-handed alpha
Helix 7	AA7	A	232	237	Right-handed alpha
Helix 8	AA8	A	239	246	Right-handed alpha
Helix 9	AA9	A	280	289	Right-handed alpha
Helix 10	AB1	A	295	299	Right-handed 310
Helix 11	AB2	A	352	355	Right-handed 310
Helix 12	AB3	A	406	411	Right-handed alpha
Helix 13	AB4	B	22	35	Right-handed alpha
Helix 14	AB5	B	37	41	Right-handed 310
Helix 15	AB6	B	56	60	Right-handed 310
Helix 16	AB7	C	130	142	Right-handed alpha
Helix 17	AB8	C	143	152	Right-handed alpha
Helix 18	AB9	C	165	179	Right-handed alpha
Helix 19	AC1	C	187	193	Right-handed alpha
Helix 20	AC2	C	193	198	Right-handed alpha
Helix 21	AC3	C	209	226	Right-handed alpha
Helix 22	AC4	C	232	237	Right-handed alpha
Helix 23	AC5	C	239	246	Right-handed alpha
Helix 24	AC6	C	280	289	Right-handed alpha
Helix 25	AC7	C	295	299	Right-handed 310
Helix 26	AC8	C	352	355	Right-handed 310
Helix 27	AC9	C	406	411	Right-handed alpha
Helix 28	AD1	D	22	35	Right-handed alpha
Helix 29	AD2	D	37	41	Right-handed 310
Helix 30	AD3	D	55	60	Right-handed 310

There are 14 sheets in PDB entry 8BS9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	A	184	185	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	B	74	75	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	268	first strand
Strand 2	A	247	255	anti-parallel
Strand 3	A	311	319	anti-parallel
Strand 4	A	292	294	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	323	329	parallel
Strand 3	A	415	422	anti-parallel
Strand 4	A	364	374	anti-parallel
Strand 5	A	348	350	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	323	329	parallel
Strand 3	A	415	422	anti-parallel
Strand 4	A	364	374	anti-parallel
Strand 5	A	382	388	anti-parallel
Strand 6	A	394	398	anti-parallel
Strand 7	A	401	404	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	302	first strand
Strand 2	A	307	309	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	66	70	parallel
Strand 4	B	42	45	anti-parallel
Strand 5	B	48	49	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	124	first strand
Strand 2	C	184	185	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	D	74	75	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	268	first strand
Strand 2	C	247	255	anti-parallel
Strand 3	C	311	319	anti-parallel
Strand 4	C	292	294	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	274	first strand
Strand 2	C	323	329	parallel
Strand 3	C	415	422	anti-parallel
Strand 4	C	364	374	anti-parallel
Strand 5	C	348	350	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	274	first strand
Strand 2	C	323	329	parallel
Strand 3	C	415	422	anti-parallel
Strand 4	C	364	374	anti-parallel
Strand 5	C	382	388	anti-parallel
Strand 6	C	394	398	anti-parallel
Strand 7	C	401	404	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	302	first strand
Strand 2	C	307	309	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	66	70	parallel
Strand 4	D	42	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BS9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BS9