Analysis of interatomic Contacts of Structural Units in PDB entry:
8BSC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BSC entry

There are 7 chains in PDB entry 8BSC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLY 21	ASP 339
A	GLY 21	ASP 339
B	GLY 21	ASP 339
C	GLY 21	ASP 339
E	GLY 21	ASP 339
F	GLY 21	ASP 339
G	GLY 21	ASP 339

There are 98 helices in PDB entry 8BSC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	25	33	Right-handed alpha
Helix 2	AA2	D	37	44	Right-handed alpha
Helix 3	AA3	D	49	54	Right-handed alpha
Helix 4	AA4	D	56	62	Right-handed alpha
Helix 5	AA5	D	67	82	Right-handed alpha
Helix 6	AA6	D	89	97	Right-handed alpha
Helix 7	AA7	D	106	114	Right-handed alpha
Helix 8	AA8	D	132	144	Right-handed alpha
Helix 9	AA9	D	147	151	Right-handed 310
Helix 10	AB1	D	167	169	Right-handed 310
Helix 11	AB2	D	170	179	Right-handed alpha
Helix 12	AB3	D	181	186	Right-handed alpha
Helix 13	AB4	D	196	211	Right-handed alpha
Helix 14	AB5	D	237	259	Right-handed alpha
Helix 15	AB6	A	25	33	Right-handed alpha
Helix 16	AB7	A	37	44	Right-handed alpha
Helix 17	AB8	A	49	54	Right-handed alpha
Helix 18	AB9	A	56	62	Right-handed alpha
Helix 19	AC1	A	67	82	Right-handed alpha
Helix 20	AC2	A	89	97	Right-handed alpha
Helix 21	AC3	A	106	114	Right-handed alpha
Helix 22	AC4	A	132	144	Right-handed alpha
Helix 23	AC5	A	147	151	Right-handed 310
Helix 24	AC6	A	167	169	Right-handed 310
Helix 25	AC7	A	170	179	Right-handed alpha
Helix 26	AC8	A	181	186	Right-handed alpha
Helix 27	AC9	A	196	211	Right-handed alpha
Helix 28	AD1	A	237	259	Right-handed alpha
Helix 29	AD2	B	25	33	Right-handed alpha
Helix 30	AD3	B	37	44	Right-handed alpha
Helix 31	AD4	B	49	54	Right-handed alpha
Helix 32	AD5	B	56	62	Right-handed alpha
Helix 33	AD6	B	67	82	Right-handed alpha
Helix 34	AD7	B	89	97	Right-handed alpha
Helix 35	AD8	B	106	114	Right-handed alpha
Helix 36	AD9	B	132	144	Right-handed alpha
Helix 37	AE1	B	147	151	Right-handed 310
Helix 38	AE2	B	167	169	Right-handed 310
Helix 39	AE3	B	170	179	Right-handed alpha
Helix 40	AE4	B	181	186	Right-handed alpha
Helix 41	AE5	B	196	211	Right-handed alpha
Helix 42	AE6	B	237	259	Right-handed alpha
Helix 43	AE7	C	25	33	Right-handed alpha
Helix 44	AE8	C	37	44	Right-handed alpha
Helix 45	AE9	C	49	54	Right-handed alpha
Helix 46	AF1	C	56	62	Right-handed alpha
Helix 47	AF2	C	67	82	Right-handed alpha
Helix 48	AF3	C	89	97	Right-handed alpha
Helix 49	AF4	C	106	114	Right-handed alpha
Helix 50	AF5	C	132	144	Right-handed alpha
Helix 51	AF6	C	147	151	Right-handed 310
Helix 52	AF7	C	167	169	Right-handed 310
Helix 53	AF8	C	170	179	Right-handed alpha
Helix 54	AF9	C	181	186	Right-handed alpha
Helix 55	AG1	C	196	211	Right-handed alpha
Helix 56	AG2	C	237	259	Right-handed alpha
Helix 57	AG3	E	25	33	Right-handed alpha
Helix 58	AG4	E	37	44	Right-handed alpha
Helix 59	AG5	E	49	54	Right-handed alpha
Helix 60	AG6	E	56	62	Right-handed alpha
Helix 61	AG7	E	67	82	Right-handed alpha
Helix 62	AG8	E	89	97	Right-handed alpha
Helix 63	AG9	E	106	114	Right-handed alpha
Helix 64	AH1	E	132	144	Right-handed alpha
Helix 65	AH2	E	147	151	Right-handed 310
Helix 66	AH3	E	167	169	Right-handed 310
Helix 67	AH4	E	170	179	Right-handed alpha
Helix 68	AH5	E	181	186	Right-handed alpha
Helix 69	AH6	E	196	211	Right-handed alpha
Helix 70	AH7	E	237	259	Right-handed alpha
Helix 71	AH8	F	25	33	Right-handed alpha
Helix 72	AH9	F	37	44	Right-handed alpha
Helix 73	AI1	F	49	54	Right-handed alpha
Helix 74	AI2	F	56	62	Right-handed alpha
Helix 75	AI3	F	67	82	Right-handed alpha
Helix 76	AI4	F	89	97	Right-handed alpha
Helix 77	AI5	F	106	114	Right-handed alpha
Helix 78	AI6	F	132	144	Right-handed alpha
Helix 79	AI7	F	147	151	Right-handed 310
Helix 80	AI8	F	167	169	Right-handed 310
Helix 81	AI9	F	170	179	Right-handed alpha
Helix 82	AJ1	F	181	186	Right-handed alpha
Helix 83	AJ2	F	196	211	Right-handed alpha
Helix 84	AJ3	F	237	259	Right-handed alpha
Helix 85	AJ4	G	25	33	Right-handed alpha
Helix 86	AJ5	G	37	44	Right-handed alpha
Helix 87	AJ6	G	49	54	Right-handed alpha
Helix 88	AJ7	G	56	62	Right-handed alpha
Helix 89	AJ8	G	67	82	Right-handed alpha
Helix 90	AJ9	G	88	97	Right-handed alpha
Helix 91	AK1	G	106	114	Right-handed alpha
Helix 92	AK2	G	132	144	Right-handed alpha
Helix 93	AK3	G	147	151	Right-handed 310
Helix 94	AK4	G	167	169	Right-handed 310
Helix 95	AK5	G	170	179	Right-handed alpha
Helix 96	AK6	G	181	186	Right-handed alpha
Helix 97	AK7	G	196	211	Right-handed alpha
Helix 98	AK8	G	237	259	Right-handed alpha

There are 14 sheets in PDB entry 8BSC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	E	189	193	anti-parallel
Strand 3	E	156	161	parallel
Strand 4	E	216	222	parallel
Strand 5	E	262	268	parallel
Strand 6	E	122	127	parallel
Strand 7	E	298	304	parallel
Strand 8	E	310	316	anti-parallel
Strand 9	E	324	330	anti-parallel
Strand 10	E	333	335	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	102	first strand
Strand 2	D	117	118	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	335	first strand
Strand 2	D	324	330	anti-parallel
Strand 3	D	310	316	anti-parallel
Strand 4	D	298	304	anti-parallel
Strand 5	D	122	127	parallel
Strand 6	D	262	268	parallel
Strand 7	D	216	222	parallel
Strand 8	D	156	161	parallel
Strand 9	D	189	193	parallel
Strand 10	C	87	88	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	B	189	193	anti-parallel
Strand 3	B	156	161	parallel
Strand 4	B	216	222	parallel
Strand 5	B	262	268	parallel
Strand 6	B	122	127	parallel
Strand 7	B	298	304	parallel
Strand 8	B	310	316	anti-parallel
Strand 9	B	324	330	anti-parallel
Strand 10	B	333	335	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	117	118	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	193	first strand
Strand 2	A	156	161	parallel
Strand 3	A	216	222	parallel
Strand 4	A	262	268	parallel
Strand 5	A	122	127	parallel
Strand 6	A	298	304	parallel
Strand 7	A	310	316	anti-parallel
Strand 8	A	324	330	anti-parallel
Strand 9	A	333	335	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	C	189	193	anti-parallel
Strand 3	C	156	161	parallel
Strand 4	C	216	222	parallel
Strand 5	C	262	268	parallel
Strand 6	C	122	127	parallel
Strand 7	C	298	304	parallel
Strand 8	C	310	316	anti-parallel
Strand 9	C	324	330	anti-parallel
Strand 10	C	333	335	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	117	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	117	118	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	F	189	193	anti-parallel
Strand 3	F	156	161	parallel
Strand 4	F	216	222	parallel
Strand 5	F	262	268	parallel
Strand 6	F	122	127	parallel
Strand 7	F	298	304	parallel
Strand 8	F	310	316	anti-parallel
Strand 9	F	324	330	anti-parallel
Strand 10	F	333	335	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	102	first strand
Strand 2	E	117	118	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	88	first strand
Strand 2	G	189	193	anti-parallel
Strand 3	G	156	161	parallel
Strand 4	G	216	222	parallel
Strand 5	G	262	268	parallel
Strand 6	G	122	127	parallel
Strand 7	G	298	304	parallel
Strand 8	G	310	316	anti-parallel
Strand 9	G	324	330	anti-parallel
Strand 10	G	333	335	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	101	102	first strand
Strand 2	F	117	118	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	102	first strand
Strand 2	G	117	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BSC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BSC