Analysis of interatomic Contacts of Structural Units in PDB entry:
8BV1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BV1 entry

There are 18 chains in PDB entry 8BV1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 155
B	ALA 2	ASN 156
C	ALA 2	TRP 153
D	ALA 2	ASP 155
E	ALA 2	ASP 155
F	ALA 2	ASP 155
N	GLU 2	LYS 3
N	ALA 5	ALA 12
G	GLU 2	LYS 3
G	ALA 5	ALA 12
K	GLU 2	LYS 3
K	ALA 5	ALA 12
H	GLU 2	LYS 3
H	ALA 5	ALA 12
L	GLU 2	LYS 3
L	ALA 5	ALA 12
I	GLU 2	LYS 3
I	ALA 5	ALA 12

There are 32 helices in PDB entry 8BV1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	52	Right-handed 310
Helix 2	AA2	A	80	84	Right-handed 310
Helix 3	AA3	A	85	90	Right-handed alpha
Helix 4	AA4	A	119	125	Right-handed alpha
Helix 5	AA5	A	131	133	Right-handed 310
Helix 6	AA6	B	50	52	Right-handed 310
Helix 7	AA7	B	80	84	Right-handed 310
Helix 8	AA8	B	85	90	Right-handed alpha
Helix 9	AA9	B	119	125	Right-handed alpha
Helix 10	AB1	C	50	52	Right-handed 310
Helix 11	AB2	C	80	84	Right-handed 310
Helix 12	AB3	C	85	90	Right-handed alpha
Helix 13	AB4	C	119	125	Right-handed alpha
Helix 14	AB5	D	50	52	Right-handed 310
Helix 15	AB6	D	80	84	Right-handed 310
Helix 16	AB7	D	85	90	Right-handed alpha
Helix 17	AB8	D	119	125	Right-handed alpha
Helix 18	AB9	E	50	52	Right-handed 310
Helix 19	AC1	E	80	84	Right-handed 310
Helix 20	AC2	E	85	90	Right-handed alpha
Helix 21	AC3	E	119	125	Right-handed alpha
Helix 22	AC4	F	50	52	Right-handed 310
Helix 23	AC5	F	80	84	Right-handed 310
Helix 24	AC6	F	85	90	Right-handed alpha
Helix 25	AC7	F	119	125	Right-handed alpha
Helix 26	AC8	F	131	133	Right-handed 310
Helix 27	AC9	N	2	12	Right-handed alpha
Helix 28	AD1	G	2	12	Right-handed alpha
Helix 29	AD2	K	2	12	Right-handed alpha
Helix 30	AD3	H	2	12	Right-handed alpha
Helix 31	AD4	L	2	12	Right-handed alpha
Helix 32	AD5	I	2	12	Right-handed alpha

There are 18 sheets in PDB entry 8BV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	12	first strand
Strand 2	A	22	30	anti-parallel
Strand 3	A	68	76	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	104	117	anti-parallel
Strand 4	A	91	101	anti-parallel
Strand 5	A	38	45	anti-parallel
Strand 6	A	54	62	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	104	117	anti-parallel
Strand 4	A	145	148	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	11	first strand
Strand 2	B	22	30	anti-parallel
Strand 3	B	68	76	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	135	139	anti-parallel
Strand 3	B	104	117	anti-parallel
Strand 4	B	91	101	anti-parallel
Strand 5	B	38	45	anti-parallel
Strand 6	B	54	62	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	135	139	anti-parallel
Strand 3	B	104	117	anti-parallel
Strand 4	B	145	148	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	11	first strand
Strand 2	C	22	30	anti-parallel
Strand 3	C	68	76	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	17	first strand
Strand 2	C	135	139	anti-parallel
Strand 3	C	104	117	anti-parallel
Strand 4	C	91	101	anti-parallel
Strand 5	C	38	45	anti-parallel
Strand 6	C	54	62	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	17	first strand
Strand 2	C	135	139	anti-parallel
Strand 3	C	104	117	anti-parallel
Strand 4	C	145	148	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	12	first strand
Strand 2	D	22	30	anti-parallel
Strand 3	D	68	76	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	17	first strand
Strand 2	D	135	139	anti-parallel
Strand 3	D	104	117	anti-parallel
Strand 4	D	91	101	anti-parallel
Strand 5	D	38	45	anti-parallel
Strand 6	D	54	62	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	17	first strand
Strand 2	D	135	139	anti-parallel
Strand 3	D	104	117	anti-parallel
Strand 4	D	145	148	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	12	first strand
Strand 2	E	22	30	anti-parallel
Strand 3	E	68	76	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	17	first strand
Strand 2	E	135	139	anti-parallel
Strand 3	E	104	117	anti-parallel
Strand 4	E	91	101	anti-parallel
Strand 5	E	38	45	anti-parallel
Strand 6	E	54	62	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	17	first strand
Strand 2	E	135	139	anti-parallel
Strand 3	E	104	117	anti-parallel
Strand 4	E	145	148	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	12	first strand
Strand 2	F	22	30	anti-parallel
Strand 3	F	68	76	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	17	first strand
Strand 2	F	135	139	anti-parallel
Strand 3	F	104	117	anti-parallel
Strand 4	F	91	101	anti-parallel
Strand 5	F	38	45	anti-parallel
Strand 6	F	54	62	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	17	first strand
Strand 2	F	135	139	anti-parallel
Strand 3	F	104	117	anti-parallel
Strand 4	F	145	148	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BV1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BV1