Analysis of interatomic Contacts of Structural Units in PDB entry:
8BV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BV5 entry

There are 2 chains in PDB entry 8BV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 361ILE 1167
B
 VAL 36GLN 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8BV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
361 378Right-handed alpha
Helix 2
AA2
A
381 393Right-handed alpha
Helix 3
AA3
A
424 429Right-handed alpha
Helix 4
AA4
A
433 455Right-handed alpha
Helix 5
AA5
A
480 500Right-handed alpha
Helix 6
AA6
A
533 546Right-handed alpha
Helix 7
AA7
A
554 562Right-handed alpha
Helix 8
AA8
A
940 957Right-handed alpha
Helix 9
AA9
A
958 967Right-handed alpha
Helix 10
AB1
A
992 997Right-handed alpha
Helix 11
AB2
A
1006 1025Right-handed alpha
Helix 12
AB3
A
1059 1083Right-handed alpha
Helix 13
AB4
A
1114 1126Right-handed alpha
Helix 14
AB5
B
52 64Right-handed alpha
Helix 15
AB6
B
89 113Right-handed alpha
Helix 16
AB7
B
121 123Right-handed 310
Helix 17
AB8
B
124 134Right-handed alpha
Helix 18
AB9
B
143 155Right-handed alpha
Helix 19
AC1
B
156 165Right-handed alpha
Helix 20
AC2
B
166 169Right-handed 310
Helix 21
AC3
B
174 181Right-handed alpha
Helix 22
AC4
B
181 186Right-handed alpha
Helix 23
AC5
B
193 200Right-handed alpha
Helix 24
AC6
B
227 231Right-handed 310
Helix 25
AC7
B
233 238Right-handed 310
Helix 26
AC8
B
250 254Right-handed 310
Helix 27
AC9
B
264 278Right-handed alpha
Helix 28
AD1
B
293 304Right-handed alpha
Helix 29
AD2
B
307 311Right-handed 310
Helix 30
AD3
B
312 318Right-handed alpha
Helix 31
AD4
B
331 352Right-handed alpha
Helix 32
AD5
B
369 388Right-handed alpha
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There are 5 sheets in PDB entry 8BV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 417first strand
Strand 2
A
513 520anti-parallel
Strand 3
A
530 532anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 463first strand
Strand 2
A
466 471anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1032 1038first strand
Strand 2
A
1041 1046anti-parallel
Strand 3
A
976 989anti-parallel
Strand 4
A
1090 1102anti-parallel
Strand 5
A
1110 1113anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1032 1038first strand
Strand 2
A
1041 1046anti-parallel
Strand 3
A
976 989anti-parallel
Strand 4
A
1090 1102anti-parallel
Strand 5
A
1132 1133parallel
Strand 6
A
1162 1163anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 214first strand
Strand 2
B
217 223anti-parallel
Strand 3
B
41 45parallel
Strand 4
B
243 246parallel
Strand 5
B
288 291parallel
Strand 6
B
362 363parallel
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