Analysis of interatomic Contacts of Structural Units in PDB entry:
8BVF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BVF entry

There are 4 chains in PDB entry 8BVF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 416
B	MET 1	GLY 418
C	ASP 434	LEU 441
D	ASP 434	SER 439

There are 19 helices in PDB entry 8BVF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	14	Right-handed alpha
Helix 2	AA2	A	26	29	Right-handed 310
Helix 3	AA3	A	163	173	Right-handed alpha
Helix 4	AA4	A	210	222	Right-handed alpha
Helix 5	AA5	A	235	248	Right-handed alpha
Helix 6	AA6	A	264	274	Right-handed alpha
Helix 7	AA7	A	308	319	Right-handed alpha
Helix 8	AA8	A	319	329	Right-handed alpha
Helix 9	AA9	B	3	14	Right-handed alpha
Helix 10	AB1	B	26	29	Right-handed 310
Helix 11	AB2	B	121	123	Right-handed 310
Helix 12	AB3	B	163	173	Right-handed alpha
Helix 13	AB4	B	210	223	Right-handed alpha
Helix 14	AB5	B	235	248	Right-handed alpha
Helix 15	AB6	B	261	263	Right-handed 310
Helix 16	AB7	B	264	274	Right-handed alpha
Helix 17	AB8	B	308	319	Right-handed alpha
Helix 18	AB9	B	319	329	Right-handed alpha
Helix 19	AC1	B	384	389	Right-handed alpha

There are 16 sheets in PDB entry 8BVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	24	first strand
Strand 2	A	177	181	anti-parallel
Strand 3	A	32	33	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	154	156	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	142	143	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	53	56	anti-parallel
Strand 3	A	101	104	anti-parallel
Strand 4	A	80	86	parallel
Strand 5	A	129	132	anti-parallel
Strand 6	A	123	125	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	232	first strand
Strand 2	A	185	191	parallel
Strand 3	A	252	256	parallel
Strand 4	A	300	305	parallel
Strand 5	A	291	295	anti-parallel
Strand 6	A	275	278	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	207	208	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	353	362	parallel
Strand 3	A	393	397	anti-parallel
Strand 4	A	409	414	anti-parallel
Strand 5	A	337	342	anti-parallel
Strand 6	A	369	373	parallel
Strand 7	A	353	362	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	403	404	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	24	first strand
Strand 2	B	177	181	anti-parallel
Strand 3	B	32	33	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	38	first strand
Strand 2	B	154	156	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	142	143	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	119	first strand
Strand 2	B	53	56	anti-parallel
Strand 3	B	101	104	anti-parallel
Strand 4	B	80	86	parallel
Strand 5	B	129	130	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	231	first strand
Strand 2	B	185	190	parallel
Strand 3	B	252	256	parallel
Strand 4	B	300	305	parallel
Strand 5	B	291	295	anti-parallel
Strand 6	B	275	278	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	196	first strand
Strand 2	B	207	208	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	C	439	440	first strand
Strand 3	B	369	373	first strand
Strand 4	B	337	342	parallel
Strand 5	B	409	414	anti-parallel
Strand 6	B	393	397	anti-parallel
Strand 7	B	353	363	anti-parallel
Strand 8	C	439	440	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	347	first strand
Strand 2	B	403	404	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BVF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BVF