Analysis of interatomic Contacts of Structural Units in PDB entry:
8BVJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BVJ entry

There are 23 chains in PDB entry 8BVJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	GLY 4	ARG 69
T	GLY 4	LEU 70
J	HIS 5	PRO 71
L	HIS 5	ARG 66
N	LYS 3	ARG 69
P	GLY 4	LEU 70
X	SER 6	PRO 67
Y	GLY 4	LEU 70
S	HIS 5	PRO 71
U	GLN 8	VAL 68
V	LYS 3	VAL 68
W	LYS 3	LEU 70
K	GLY 4	PRO 71
M	GLY 4	LEU 70
D	HIS 5	PRO 71
E	LYS 3	PRO 71
F	LYS 3	PRO 71
I	HIS 5	LEU 70
Q	GLY -2	SER 258
B	C 19	A 94
G	ALA 0	ILE 259
C	GLY -2	ILE 259
A	GLY -2	ILE 259

There are 65 helices in PDB entry 8BVJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	7	18	Right-handed alpha
Helix 2	AA2	T	7	19	Right-handed alpha
Helix 3	AA3	J	7	19	Right-handed alpha
Helix 4	AA4	L	7	18	Right-handed alpha
Helix 5	AA5	N	7	18	Right-handed alpha
Helix 6	AA6	P	7	18	Right-handed alpha
Helix 7	AA7	X	7	19	Right-handed alpha
Helix 8	AA8	Y	7	18	Right-handed alpha
Helix 9	AA9	S	7	19	Right-handed alpha
Helix 10	AB1	U	9	18	Right-handed alpha
Helix 11	AB2	V	7	19	Right-handed alpha
Helix 12	AB3	W	7	18	Right-handed alpha
Helix 13	AB4	K	7	19	Right-handed alpha
Helix 14	AB5	M	7	18	Right-handed alpha
Helix 15	AB6	D	7	19	Right-handed alpha
Helix 16	AB7	E	7	18	Right-handed alpha
Helix 17	AB8	F	7	19	Right-handed alpha
Helix 18	AB9	I	7	19	Right-handed alpha
Helix 19	AC1	Q	10	18	Right-handed alpha
Helix 20	AC2	Q	18	26	Right-handed alpha
Helix 21	AC3	Q	39	44	Right-handed alpha
Helix 22	AC4	Q	85	90	Right-handed alpha
Helix 23	AC5	Q	115	137	Right-handed alpha
Helix 24	AC6	Q	154	158	Right-handed 310
Helix 25	AC7	Q	160	165	Right-handed alpha
Helix 26	AC8	Q	171	183	Right-handed alpha
Helix 27	AC9	Q	190	195	Right-handed alpha
Helix 28	AD1	Q	207	214	Right-handed alpha
Helix 29	AD2	Q	227	230	Right-handed 310
Helix 30	AD3	G	10	17	Right-handed alpha
Helix 31	AD4	G	18	26	Right-handed alpha
Helix 32	AD5	G	39	44	Right-handed alpha
Helix 33	AD6	G	45	49	Right-handed 310
Helix 34	AD7	G	62	66	Right-handed 310
Helix 35	AD8	G	85	90	Right-handed alpha
Helix 36	AD9	G	115	135	Right-handed alpha
Helix 37	AE1	G	154	158	Right-handed 310
Helix 38	AE2	G	160	165	Right-handed alpha
Helix 39	AE3	G	171	183	Right-handed alpha
Helix 40	AE4	G	190	195	Right-handed alpha
Helix 41	AE5	G	207	214	Right-handed alpha
Helix 42	AE6	G	228	230	Right-handed 310
Helix 43	AE7	C	10	17	Right-handed alpha
Helix 44	AE8	C	18	26	Right-handed alpha
Helix 45	AE9	C	39	44	Right-handed alpha
Helix 46	AF1	C	62	66	Right-handed 310
Helix 47	AF2	C	85	90	Right-handed alpha
Helix 48	AF3	C	115	137	Right-handed alpha
Helix 49	AF4	C	154	158	Right-handed 310
Helix 50	AF5	C	160	165	Right-handed alpha
Helix 51	AF6	C	171	183	Right-handed alpha
Helix 52	AF7	C	189	195	Right-handed alpha
Helix 53	AF8	C	207	213	Right-handed alpha
Helix 54	AF9	C	225	230	Right-handed alpha
Helix 55	AG1	A	10	18	Right-handed alpha
Helix 56	AG2	A	18	26	Right-handed alpha
Helix 57	AG3	A	39	45	Right-handed alpha
Helix 58	AG4	A	85	90	Right-handed alpha
Helix 59	AG5	A	115	137	Right-handed alpha
Helix 60	AG6	A	154	158	Right-handed 310
Helix 61	AG7	A	160	165	Right-handed alpha
Helix 62	AG8	A	171	184	Right-handed alpha
Helix 63	AG9	A	189	195	Right-handed alpha
Helix 64	AH1	A	207	214	Right-handed alpha
Helix 65	AH2	A	225	230	Right-handed alpha

There are 19 sheets in PDB entry 8BVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	22	26	first strand
Strand 2	R	59	64	anti-parallel
Strand 3	P	53	55	anti-parallel
Strand 4	P	43	47	anti-parallel
Strand 5	P	35	40	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	36	39	first strand
Strand 2	R	43	46	anti-parallel
Strand 3	R	53	55	anti-parallel
Strand 4	T	59	62	anti-parallel
Strand 5	T	24	26	anti-parallel
Strand 6	T	31	32	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	35	40	first strand
Strand 2	T	43	47	anti-parallel
Strand 3	T	53	54	anti-parallel
Strand 4	J	59	64	anti-parallel
Strand 5	J	22	26	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	35	39	first strand
Strand 2	J	43	47	anti-parallel
Strand 3	J	51	55	anti-parallel
Strand 4	L	59	64	anti-parallel
Strand 5	L	22	26	anti-parallel
Strand 6	L	31	39	anti-parallel
Strand 7	L	43	47	anti-parallel
Strand 8	L	51	55	anti-parallel
Strand 9	N	59	64	anti-parallel
Strand 10	N	22	26	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	35	39	first strand
Strand 2	N	43	47	anti-parallel
Strand 3	N	52	55	anti-parallel
Strand 4	P	59	64	anti-parallel
Strand 5	P	22	26	anti-parallel
Strand 6	P	31	32	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	31	34	first strand
Strand 2	X	22	26	anti-parallel
Strand 3	X	59	64	anti-parallel

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There are 26 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	36	39	first strand
Strand 2	X	43	46	anti-parallel
Strand 3	X	53	55	anti-parallel
Strand 4	Y	59	64	anti-parallel
Strand 5	Y	21	26	anti-parallel
Strand 6	Y	33	40	anti-parallel
Strand 7	Y	43	46	anti-parallel
Strand 8	Y	53	54	anti-parallel
Strand 9	S	59	64	anti-parallel
Strand 10	S	21	26	anti-parallel
Strand 11	S	34	36	anti-parallel
Strand 12	S	43	47	anti-parallel
Strand 13	S	51	55	anti-parallel
Strand 14	U	59	64	anti-parallel
Strand 15	U	22	26	anti-parallel
Strand 16	U	31	40	anti-parallel
Strand 17	U	43	47	anti-parallel
Strand 18	U	51	54	anti-parallel
Strand 19	V	59	64	anti-parallel
Strand 20	V	21	26	anti-parallel
Strand 21	V	31	39	anti-parallel
Strand 22	V	43	47	anti-parallel
Strand 23	V	52	55	anti-parallel
Strand 24	W	59	62	anti-parallel
Strand 25	W	22	26	anti-parallel
Strand 26	W	31	34	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	36	39	first strand
Strand 2	W	43	47	anti-parallel
Strand 3	W	51	55	anti-parallel

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There are 15 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	22	26	first strand
Strand 2	M	59	64	anti-parallel
Strand 3	K	53	55	anti-parallel
Strand 4	K	43	46	anti-parallel
Strand 5	K	31	39	anti-parallel
Strand 6	K	21	26	anti-parallel
Strand 7	K	59	64	anti-parallel
Strand 8	I	51	55	anti-parallel
Strand 9	I	43	47	anti-parallel
Strand 10	I	31	39	anti-parallel
Strand 11	I	22	26	anti-parallel
Strand 12	I	59	64	anti-parallel
Strand 13	F	52	55	anti-parallel
Strand 14	F	43	47	anti-parallel
Strand 15	F	35	39	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	35	39	first strand
Strand 2	M	43	47	anti-parallel
Strand 3	M	53	55	anti-parallel
Strand 4	D	59	63	anti-parallel
Strand 5	D	23	26	anti-parallel

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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	39	first strand
Strand 2	D	43	47	anti-parallel
Strand 3	D	51	55	anti-parallel
Strand 4	E	59	64	anti-parallel
Strand 5	E	22	26	anti-parallel
Strand 6	E	31	39	anti-parallel
Strand 7	E	43	47	anti-parallel
Strand 8	E	51	55	anti-parallel
Strand 9	F	59	64	anti-parallel
Strand 10	F	22	26	anti-parallel
Strand 11	F	31	32	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	56	58	first strand
Strand 2	Q	68	72	anti-parallel
Strand 3	Q	30	34	anti-parallel
Strand 4	Q	1	7	parallel
Strand 5	Q	249	253	anti-parallel
Strand 6	Q	232	236	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	78	80	first strand
Strand 2	Q	94	98	anti-parallel
Strand 3	Q	104	108	anti-parallel
Strand 4	Q	144	148	parallel
Strand 5	Q	220	224	anti-parallel
Strand 6	Q	188	189	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	58	first strand
Strand 2	G	68	72	anti-parallel
Strand 3	G	30	33	anti-parallel
Strand 4	G	2	6	parallel
Strand 5	G	249	253	anti-parallel
Strand 6	G	232	236	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	81	first strand
Strand 2	G	94	98	anti-parallel
Strand 3	G	102	108	anti-parallel
Strand 4	G	142	148	parallel
Strand 5	G	220	224	anti-parallel
Strand 6	G	188	189	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	58	first strand
Strand 2	C	68	72	anti-parallel
Strand 3	C	30	34	anti-parallel
Strand 4	C	1	7	parallel
Strand 5	C	249	253	anti-parallel
Strand 6	C	232	236	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	81	first strand
Strand 2	C	94	98	anti-parallel
Strand 3	C	103	108	anti-parallel
Strand 4	C	143	148	parallel
Strand 5	C	220	224	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	58	first strand
Strand 2	A	68	72	anti-parallel
Strand 3	A	30	34	anti-parallel
Strand 4	A	1	7	parallel
Strand 5	A	249	253	anti-parallel
Strand 6	A	232	236	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	94	97	anti-parallel
Strand 3	A	104	108	anti-parallel
Strand 4	A	144	148	parallel
Strand 5	A	220	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BVJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BVJ