Analysis of interatomic Contacts of Structural Units in PDB entry:
8BVK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BVK entry

There are 2 chains in PDB entry 8BVK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1LEU 238
B
 SER 5ASP 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8BVK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 34Right-handed alpha
Helix 2
AA2
A
42 46Right-handed 310
Helix 3
AA3
A
47 58Right-handed alpha
Helix 4
AA4
A
68 75Right-handed alpha
Helix 5
AA5
A
75 87Right-handed alpha
Helix 6
AA6
A
97 101Right-handed 310
Helix 7
AA7
A
104 125Right-handed alpha
Helix 8
AA8
A
135 138Right-handed 310
Helix 9
AA9
A
146 155Right-handed alpha
Helix 10
AB1
A
164 170Right-handed alpha
Helix 11
AB2
A
173 181Right-handed alpha
Helix 12
AB3
A
214 225Right-handed alpha
Helix 13
AB4
B
22 34Right-handed alpha
Helix 14
AB5
B
47 58Right-handed alpha
Helix 15
AB6
B
68 75Right-handed alpha
Helix 16
AB7
B
75 86Right-handed alpha
Helix 17
AB8
B
97 101Right-handed 310
Helix 18
AB9
B
104 125Right-handed alpha
Helix 19
AC1
B
135 138Right-handed 310
Helix 20
AC2
B
146 155Right-handed alpha
Helix 21
AC3
B
164 170Right-handed alpha
Helix 22
AC4
B
173 180Right-handed alpha
Helix 23
AC5
B
214 226Right-handed alpha
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There are 4 sheets in PDB entry 8BVK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 15first strand
Strand 2
A
37 41parallel
Strand 3
A
61 66parallel
Strand 4
A
90 93parallel
Strand 5
A
129 132parallel
Strand 6
A
158 163parallel
Strand 7
A
185 191parallel
Strand 8
A
229 233parallel
Strand 9
A
10 15parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
144 145anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
37 40parallel
Strand 3
B
61 66parallel
Strand 4
B
90 93parallel
Strand 5
B
128 132parallel
Strand 6
B
158 163parallel
Strand 7
B
185 191parallel
Strand 8
B
229 233parallel
Strand 9
B
10 13parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 141first strand
Strand 2
B
144 145anti-parallel
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