Analysis of interatomic Contacts of Structural Units in PDB entry:
8BVM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BVM entry

There are 16 chains in PDB entry 8BVM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	ILE 262
B	HIS 5	LEU 70
C	HIS 5	ARG 69
D	SER 6	PRO 71
E	LYS 3	PRO 71
F	HIS 5	LEU 70
G	SER 6	PRO 71
H	GLY 1	ILE 262
I	HIS 5	LEU 70
J	HIS 5	ARG 69
K	SER 6	PRO 71
L	LYS 3	PRO 71
M	HIS 5	LEU 70
N	GLY 1	ILE 262
O	SER 6	PRO 71
u	A -2	G 58

There are 44 helices in PDB entry 8BVM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	21	Right-handed alpha
Helix 2	AA2	A	21	29	Right-handed alpha
Helix 3	AA3	A	42	47	Right-handed alpha
Helix 4	AA4	A	48	52	Right-handed 310
Helix 5	AA5	A	65	69	Right-handed 310
Helix 6	AA6	A	88	93	Right-handed alpha
Helix 7	AA7	A	118	140	Right-handed alpha
Helix 8	AA8	A	157	161	Right-handed 310
Helix 9	AA9	A	174	187	Right-handed alpha
Helix 10	AB1	A	210	216	Right-handed alpha
Helix 11	AB2	A	231	233	Right-handed 310
Helix 12	AB3	B	7	18	Right-handed alpha
Helix 13	AB4	C	7	19	Right-handed alpha
Helix 14	AB5	D	7	19	Right-handed alpha
Helix 15	AB6	E	7	18	Right-handed alpha
Helix 16	AB7	F	7	19	Right-handed alpha
Helix 17	AB8	G	7	19	Right-handed alpha
Helix 18	AB9	H	13	20	Right-handed alpha
Helix 19	AC1	H	21	29	Right-handed alpha
Helix 20	AC2	H	48	52	Right-handed 310
Helix 21	AC3	H	65	68	Right-handed 310
Helix 22	AC4	H	88	93	Right-handed alpha
Helix 23	AC5	H	118	140	Right-handed alpha
Helix 24	AC6	H	157	161	Right-handed 310
Helix 25	AC7	H	163	168	Right-handed alpha
Helix 26	AC8	H	174	187	Right-handed alpha
Helix 27	AC9	H	210	217	Right-handed alpha
Helix 28	AD1	H	229	233	Right-handed 310
Helix 29	AD2	I	7	19	Right-handed alpha
Helix 30	AD3	J	7	19	Right-handed alpha
Helix 31	AD4	K	7	19	Right-handed alpha
Helix 32	AD5	L	7	19	Right-handed alpha
Helix 33	AD6	M	7	19	Right-handed alpha
Helix 34	AD7	N	13	21	Right-handed alpha
Helix 35	AD8	N	21	27	Right-handed alpha
Helix 36	AD9	N	42	47	Right-handed alpha
Helix 37	AE1	N	88	93	Right-handed alpha
Helix 38	AE2	N	118	140	Right-handed alpha
Helix 39	AE3	N	157	161	Right-handed 310
Helix 40	AE4	N	163	168	Right-handed alpha
Helix 41	AE5	N	174	187	Right-handed alpha
Helix 42	AE6	N	210	217	Right-handed alpha
Helix 43	AE7	N	229	232	Right-handed 310
Helix 44	AE8	O	7	18	Right-handed alpha

There are 8 sheets in PDB entry 8BVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	72	75	anti-parallel
Strand 3	A	33	37	anti-parallel
Strand 4	A	4	10	parallel
Strand 5	A	252	256	anti-parallel
Strand 6	A	235	239	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	84	first strand
Strand 2	A	97	101	anti-parallel
Strand 3	A	105	111	anti-parallel
Strand 4	A	145	151	parallel
Strand 5	A	226	227	anti-parallel
Strand 6	A	191	192	anti-parallel

Back to list of sheets
Back to top of page

There are 31 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	26	first strand
Strand 2	B	31	39	anti-parallel
Strand 3	B	43	47	anti-parallel
Strand 4	B	52	55	anti-parallel
Strand 5	C	59	64	anti-parallel
Strand 6	C	22	26	anti-parallel
Strand 7	C	31	39	anti-parallel
Strand 8	C	43	47	anti-parallel
Strand 9	C	52	55	anti-parallel
Strand 10	D	59	64	anti-parallel
Strand 11	D	21	26	anti-parallel
Strand 12	D	31	39	anti-parallel
Strand 13	D	43	47	anti-parallel
Strand 14	D	52	55	anti-parallel
Strand 15	E	59	64	anti-parallel
Strand 16	E	22	26	anti-parallel
Strand 17	E	31	39	anti-parallel
Strand 18	E	43	47	anti-parallel
Strand 19	E	51	55	anti-parallel
Strand 20	F	59	64	anti-parallel
Strand 21	F	22	26	anti-parallel
Strand 22	F	31	39	anti-parallel
Strand 23	F	43	47	anti-parallel
Strand 24	F	52	55	anti-parallel
Strand 25	O	59	64	anti-parallel
Strand 26	O	21	26	anti-parallel
Strand 27	O	31	39	anti-parallel
Strand 28	O	43	47	anti-parallel
Strand 29	O	52	55	anti-parallel
Strand 30	B	59	64	anti-parallel
Strand 31	B	22	26	anti-parallel

Back to list of sheets
Back to top of page

There are 31 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	26	first strand
Strand 2	G	31	39	anti-parallel
Strand 3	G	43	47	anti-parallel
Strand 4	G	52	55	anti-parallel
Strand 5	I	59	64	anti-parallel
Strand 6	I	22	26	anti-parallel
Strand 7	I	31	39	anti-parallel
Strand 8	I	43	47	anti-parallel
Strand 9	I	52	55	anti-parallel
Strand 10	J	59	64	anti-parallel
Strand 11	J	22	26	anti-parallel
Strand 12	J	31	36	anti-parallel
Strand 13	J	43	47	anti-parallel
Strand 14	J	52	55	anti-parallel
Strand 15	K	59	64	anti-parallel
Strand 16	K	22	26	anti-parallel
Strand 17	K	31	39	anti-parallel
Strand 18	K	43	47	anti-parallel
Strand 19	K	52	55	anti-parallel
Strand 20	L	59	64	anti-parallel
Strand 21	L	22	26	anti-parallel
Strand 22	L	31	39	anti-parallel
Strand 23	L	43	47	anti-parallel
Strand 24	L	51	55	anti-parallel
Strand 25	M	59	64	anti-parallel
Strand 26	M	22	26	anti-parallel
Strand 27	M	31	39	anti-parallel
Strand 28	M	43	47	anti-parallel
Strand 29	M	52	55	anti-parallel
Strand 30	G	59	64	anti-parallel
Strand 31	G	21	26	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	62	first strand
Strand 2	H	70	75	anti-parallel
Strand 3	H	33	37	anti-parallel
Strand 4	H	4	10	parallel
Strand 5	H	252	256	anti-parallel
Strand 6	H	235	239	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	81	84	first strand
Strand 2	H	97	101	anti-parallel
Strand 3	H	105	111	anti-parallel
Strand 4	H	145	151	parallel
Strand 5	H	226	227	anti-parallel
Strand 6	H	191	192	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	57	60	first strand
Strand 2	N	72	75	anti-parallel
Strand 3	N	33	37	anti-parallel
Strand 4	N	4	10	parallel
Strand 5	N	252	256	anti-parallel
Strand 6	N	235	239	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	81	84	first strand
Strand 2	N	97	101	anti-parallel
Strand 3	N	105	111	anti-parallel
Strand 4	N	145	151	parallel
Strand 5	N	223	227	anti-parallel
Strand 6	N	191	192	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BVM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BVM