Analysis of interatomic Contacts of Structural Units in PDB entry:
8BVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BVP entry

There is 1 chain in PDB entry 8BVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 35LEU 573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8BVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 70Right-handed alpha
Helix 2
AA2
A
70 76Right-handed alpha
Helix 3
AA3
A
93 104Right-handed alpha
Helix 4
AA4
A
136 167Right-handed alpha
Helix 5
AA5
A
170 185Right-handed alpha
Helix 6
AA6
A
186 192Right-handed 310
Helix 7
AA7
A
194 204Right-handed alpha
Helix 8
AA8
A
204 225Right-handed alpha
Helix 9
AA9
A
231 243Right-handed alpha
Helix 10
AB1
A
265 271Right-handed 310
Helix 11
AB2
A
272 301Right-handed alpha
Helix 12
AB3
A
301 310Right-handed alpha
Helix 13
AB4
A
313 329Right-handed alpha
Helix 14
AB5
A
334 344Right-handed alpha
Helix 15
AB6
A
346 361Right-handed alpha
Helix 16
AB7
A
363 370Right-handed alpha
Helix 17
AB8
A
373 387Right-handed alpha
Helix 18
AB9
A
392 397Right-handed alpha
Helix 19
AC1
A
398 400Right-handed 310
Helix 20
AC2
A
410 424Right-handed alpha
Helix 21
AC3
A
427 438Right-handed alpha
Helix 22
AC4
A
462 472Right-handed alpha
Helix 23
AC5
A
483 487Right-handed 310
Helix 24
AC6
A
489 503Right-handed alpha
Helix 25
AC7
A
510 524Right-handed alpha
Helix 26
AC8
A
527 531Right-handed 310
Helix 27
AC9
A
533 544Right-handed alpha
Helix 28
AD1
A
560 562Right-handed 310
Helix 29
AD2
A
568 573Right-handed 310
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There are 2 sheets in PDB entry 8BVP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
447 452parallel
Strand 3
A
475 480parallel
Strand 4
A
505 508parallel
Strand 5
A
564 566parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
82 86anti-parallel
Strand 3
A
110 113parallel
Strand 4
A
119 125anti-parallel
Strand 5
A
132 135anti-parallel
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