Analysis of interatomic Contacts of Structural Units in PDB entry:
8BVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BVR entry

There are 2 chains in PDB entry 8BVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 526
B
 GLN 1ALA 115
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8BVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 10Right-handed alpha
Helix 2
AA2
A
14 26Right-handed alpha
Helix 3
AA3
A
27 42Right-handed alpha
Helix 4
AA4
A
57 61Right-handed 310
Helix 5
AA5
A
119 125Right-handed alpha
Helix 6
AA6
A
130 160Right-handed alpha
Helix 7
AA7
A
161 181Right-handed alpha
Helix 8
AA8
A
184 214Right-handed alpha
Helix 9
AA9
A
215 217Right-handed 310
Helix 10
AB1
A
218 244Right-handed alpha
Helix 11
AB2
A
247 265Right-handed alpha
Helix 12
AB3
A
266 268Right-handed 310
Helix 13
AB4
A
271 278Right-handed alpha
Helix 14
AB5
A
281 296Right-handed alpha
Helix 15
AB6
A
298 304Right-handed alpha
Helix 16
AB7
A
305 311Right-handed alpha
Helix 17
AB8
A
313 318Right-handed alpha
Helix 18
AB9
A
326 332Right-handed alpha
Helix 19
AC1
A
332 358Right-handed alpha
Helix 20
AC2
A
359 364Right-handed 310
Helix 21
AC3
A
366 392Right-handed alpha
Helix 22
AC4
A
394 415Right-handed alpha
Helix 23
AC5
A
420 449Right-handed alpha
Helix 24
AC6
A
453 478Right-handed alpha
Helix 25
AC7
A
484 502Right-handed alpha
Helix 26
AC8
A
516 526Right-handed alpha
Helix 27
AC9
B
52 56Right-handed 310
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There are 4 sheets in PDB entry 8BVR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
109 111anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
103 104anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
68 73anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 60first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
34 38anti-parallel
Strand 4
B
93 96anti-parallel
Strand 5
B
109 110anti-parallel
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