Analysis of interatomic Contacts of Structural Units in PDB entry:
8BW9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BW9 entry

There are 4 chains in PDB entry 8BW9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 19TYR 106
B
 PRO 0MET 291
C
 GLU 81LEU 384
D
 THR 731ARG 947
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8BW9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
27 39Right-handed alpha
Helix 3
AA3
A
45 53Right-handed alpha
Helix 4
AA4
A
55 61Right-handed alpha
Helix 5
AA5
A
63 71Right-handed alpha
Helix 6
AA6
A
74 106Right-handed alpha
Helix 7
AA7
B
10 20Right-handed alpha
Helix 8
AA8
B
25 27Right-handed 310
Helix 9
AA9
B
28 36Right-handed alpha
Helix 10
AB1
B
38 44Right-handed alpha
Helix 11
AB2
B
46 51Right-handed alpha
Helix 12
AB3
B
52 54Right-handed 310
Helix 13
AB4
B
57 77Right-handed alpha
Helix 14
AB5
B
78 81Right-handed 310
Helix 15
AB6
B
82 105Right-handed alpha
Helix 16
AB7
B
112 134Right-handed alpha
Helix 17
AB8
B
135 139Right-handed 310
Helix 18
AB9
B
141 165Right-handed alpha
Helix 19
AC1
B
171 192Right-handed alpha
Helix 20
AC2
B
195 199Right-handed 310
Helix 21
AC3
B
236 243Right-handed alpha
Helix 22
AC4
B
263 273Right-handed alpha
Helix 23
AC5
C
83 87Right-handed 310
Helix 24
AC6
C
123 132Right-handed alpha
Helix 25
AC7
C
134 139Right-handed alpha
Helix 26
AC8
C
169 178Right-handed alpha
Helix 27
AC9
C
181 204Right-handed alpha
Helix 28
AD1
C
231 237Right-handed alpha
Helix 29
AD2
C
261 278Right-handed alpha
Helix 30
AD3
C
312 323Right-handed alpha
Helix 31
AD4
C
334 345Right-handed alpha
Helix 32
AD5
C
348 352Right-handed 310
Helix 33
AD6
C
354 359Right-handed alpha
Helix 34
AD7
C
361 370Right-handed alpha
Helix 35
AD8
C
373 382Right-handed alpha
Helix 36
AD9
D
760 768Right-handed alpha
Helix 37
AE1
D
773 793Right-handed alpha
Helix 38
AE2
D
864 881Right-handed alpha
Helix 39
AE3
D
890 900Right-handed alpha
Helix 40
AE4
D
912 923Right-handed alpha
Helix 41
AE5
D
932 942Right-handed alpha
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There are 5 sheets in PDB entry 8BW9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 209first strand
Strand 2
B
278 284anti-parallel
Strand 3
B
250 254anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 220first strand
Strand 2
B
230 231anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 105first strand
Strand 2
C
112 113anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 119first strand
Strand 2
C
157 162anti-parallel
Strand 3
C
148 154anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
806 809first strand
Strand 2
D
812 815anti-parallel
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