Analysis of interatomic Contacts of Structural Units in PDB entry:
8BWF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BWF entry

There are 80 chains in PDB entry 8BWF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 56	HIS 133
a	ASN 143	GLN 144
a	ARG 146	GLN 148
a	ALA 150	GLN 152
a	VAL 154	ASN 155
B	PRO 56	ASN 132
b	ASN 143	GLN 144
b	ARG 146	GLN 148
b	ALA 150	GLN 152
b	VAL 154	ASN 155
C	GLY 55	HIS 133
c	ASN 143	GLN 144
c	ARG 146	GLN 148
c	ALA 150	GLN 152
c	VAL 154	ASN 155
D	SER 58	LYS 134
d	ASN 143	GLN 144
d	ARG 146	GLN 148
d	ALA 150	GLN 152
d	VAL 154	ASN 155
E	SER 58	ASN 132
e	ASN 143	GLN 144
e	ARG 146	GLN 148
e	ALA 150	GLN 152
e	VAL 154	ASN 155
F	GLY 55	HIS 133
f	ASN 143	GLN 144
f	ARG 146	GLN 148
f	ALA 150	GLN 152
f	VAL 154	ASN 155
G	PRO 56	GLU 135
g	ASN 143	GLN 144
g	ARG 146	GLN 148
g	ALA 150	GLN 152
g	VAL 154	ASN 155
H	PRO 57	HIS 133
h	ASN 143	GLN 144
h	ARG 146	GLN 148
h	ALA 150	GLN 152
h	VAL 154	ASN 155
I	PRO 56	ASN 132
i	ASN 143	GLN 144
i	ARG 146	GLN 148
i	ALA 150	GLN 152
i	VAL 154	ASN 155
J	PRO 56	HIS 133
j	ASN 143	GLN 144
j	ARG 146	GLN 148
j	ALA 150	GLN 152
j	VAL 154	ASN 155
K	PRO 56	THR 138
k	ASN 143	GLN 144
k	ARG 146	GLN 148
k	ALA 150	GLN 152
k	VAL 154	ASN 155
L	SER 58	LYS 134
l	ASN 143	GLN 144
l	ARG 146	GLN 148
l	ALA 150	GLN 152
l	VAL 154	ASN 155
M	PRO 57	HIS 133
m	ASN 143	GLN 144
m	ARG 146	GLN 148
m	ALA 150	GLN 152
m	VAL 154	ASN 155
N	ARG 59	THR 138
n	ASN 143	GLN 144
n	ARG 146	GLN 148
n	ALA 150	GLN 152
n	VAL 154	ASN 155
O	PRO 57	LYS 134
o	ASN 143	GLN 144
o	ARG 146	GLN 148
o	ALA 150	GLN 152
o	VAL 154	ASN 155
P	ARG 59	SER 131
p	ASN 143	GLN 144
p	ARG 146	GLN 148
p	ALA 150	GLN 152
p	VAL 154	ASN 155

There are 53 helices in PDB entry 8BWF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	80	Right-handed alpha
Helix 2	AA2	A	81	83	Right-handed 310
Helix 3	AA3	A	92	95	Right-handed 310
Helix 4	AA4	A	103	117	Right-handed alpha
Helix 5	AA5	a	144	152	Right-handed alpha
Helix 6	AA6	B	71	80	Right-handed alpha
Helix 7	AA7	B	103	117	Right-handed alpha
Helix 8	AA8	b	144	152	Right-handed alpha
Helix 9	AA9	C	71	78	Right-handed alpha
Helix 10	AB1	C	103	117	Right-handed alpha
Helix 11	AB2	c	144	152	Right-handed alpha
Helix 12	AB3	D	71	77	Right-handed alpha
Helix 13	AB4	D	103	117	Right-handed alpha
Helix 14	AB5	d	144	152	Right-handed alpha
Helix 15	AB6	E	71	80	Right-handed alpha
Helix 16	AB7	E	103	115	Right-handed alpha
Helix 17	AB8	e	144	152	Right-handed alpha
Helix 18	AB9	F	71	78	Right-handed alpha
Helix 19	AC1	F	103	117	Right-handed alpha
Helix 20	AC2	f	144	152	Right-handed alpha
Helix 21	AC3	G	71	80	Right-handed alpha
Helix 22	AC4	G	103	117	Right-handed alpha
Helix 23	AC5	g	144	152	Right-handed alpha
Helix 24	AC6	H	71	78	Right-handed alpha
Helix 25	AC7	H	103	116	Right-handed alpha
Helix 26	AC8	h	144	152	Right-handed alpha
Helix 27	AC9	I	71	77	Right-handed alpha
Helix 28	AD1	I	103	115	Right-handed alpha
Helix 29	AD2	i	144	152	Right-handed alpha
Helix 30	AD3	J	71	80	Right-handed alpha
Helix 31	AD4	J	92	95	Right-handed 310
Helix 32	AD5	J	103	112	Right-handed alpha
Helix 33	AD6	j	144	152	Right-handed alpha
Helix 34	AD7	K	71	80	Right-handed alpha
Helix 35	AD8	K	103	117	Right-handed alpha
Helix 36	AD9	k	144	152	Right-handed alpha
Helix 37	AE1	L	71	77	Right-handed alpha
Helix 38	AE2	L	103	117	Right-handed alpha
Helix 39	AE3	l	144	152	Right-handed alpha
Helix 40	AE4	M	71	80	Right-handed alpha
Helix 41	AE5	M	103	117	Right-handed alpha
Helix 42	AE6	M	120	124	Right-handed 310
Helix 43	AE7	m	144	152	Right-handed alpha
Helix 44	AE8	N	71	80	Right-handed alpha
Helix 45	AE9	N	81	83	Right-handed 310
Helix 46	AF1	N	103	117	Right-handed alpha
Helix 47	AF2	n	144	152	Right-handed alpha
Helix 48	AF3	O	71	78	Right-handed alpha
Helix 49	AF4	O	103	114	Right-handed alpha
Helix 50	AF5	o	144	152	Right-handed alpha
Helix 51	AF6	P	71	77	Right-handed alpha
Helix 52	AF7	P	103	117	Right-handed alpha
Helix 53	AF8	p	144	152	Right-handed alpha

There are 27 sheets in PDB entry 8BWF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	91	first strand
Strand 2	A	96	101	anti-parallel
Strand 3	A	60	64	anti-parallel
Strand 4	A	127	130	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	124	125	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	90	first strand
Strand 2	B	97	101	anti-parallel
Strand 3	B	60	64	anti-parallel
Strand 4	B	127	130	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	124	125	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	91	first strand
Strand 2	C	96	101	anti-parallel
Strand 3	C	60	63	anti-parallel
Strand 4	C	128	130	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	121	first strand
Strand 2	C	124	125	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	91	first strand
Strand 2	D	96	101	anti-parallel
Strand 3	D	60	64	anti-parallel
Strand 4	D	127	130	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	121	first strand
Strand 2	D	124	125	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	91	first strand
Strand 2	E	96	101	anti-parallel
Strand 3	E	60	64	anti-parallel
Strand 4	E	127	130	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	85	90	first strand
Strand 2	F	97	101	anti-parallel
Strand 3	F	60	64	anti-parallel
Strand 4	F	127	130	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	121	first strand
Strand 2	F	124	125	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	85	90	first strand
Strand 2	G	97	101	anti-parallel
Strand 3	G	60	63	anti-parallel
Strand 4	G	129	130	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	121	first strand
Strand 2	G	124	125	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	85	90	first strand
Strand 2	H	97	101	anti-parallel
Strand 3	H	60	63	anti-parallel
Strand 4	H	128	130	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	85	91	first strand
Strand 2	I	96	101	anti-parallel
Strand 3	I	60	64	anti-parallel
Strand 4	I	127	129	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	121	first strand
Strand 2	I	124	125	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	85	91	first strand
Strand 2	J	96	101	anti-parallel
Strand 3	J	60	64	anti-parallel
Strand 4	J	127	130	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	120	121	first strand
Strand 2	J	124	125	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	85	91	first strand
Strand 2	K	96	101	anti-parallel
Strand 3	K	60	64	anti-parallel
Strand 4	K	127	130	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	85	91	first strand
Strand 2	L	96	101	anti-parallel
Strand 3	L	60	64	anti-parallel
Strand 4	L	127	130	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	120	121	first strand
Strand 2	L	124	125	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	85	90	first strand
Strand 2	M	96	101	anti-parallel
Strand 3	M	61	64	anti-parallel
Strand 4	M	127	128	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	85	91	first strand
Strand 2	N	96	101	anti-parallel
Strand 3	N	60	64	anti-parallel
Strand 4	N	127	130	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	120	121	first strand
Strand 2	N	124	125	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	85	91	first strand
Strand 2	O	96	101	anti-parallel
Strand 3	O	60	64	anti-parallel
Strand 4	O	127	130	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	60	64	first strand
Strand 2	P	96	100	anti-parallel
Strand 3	P	87	90	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	120	121	first strand
Strand 2	P	124	125	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BWF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BWF