Analysis of interatomic Contacts of Structural Units in PDB entry:
8BWK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BWK entry

There is 1 chain in PDB entry 8BWK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	SER 647

There are 24 helices in PDB entry 8BWK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	19	Right-handed alpha
Helix 2	AA2	A	158	162	Right-handed 310
Helix 3	AA3	A	191	195	Right-handed 310
Helix 4	AA4	A	285	289	Right-handed 310
Helix 5	AA5	A	380	382	Right-handed 310
Helix 6	AA6	A	418	422	Right-handed 310
Helix 7	AA7	A	447	458	Right-handed alpha
Helix 8	AA8	B	10	18	Right-handed alpha
Helix 9	AA9	B	19	21	Right-handed 310
Helix 10	AB1	B	191	195	Right-handed 310
Helix 11	AB2	B	285	289	Right-handed 310
Helix 12	AB3	B	418	422	Right-handed 310
Helix 13	AB4	B	447	458	Right-handed alpha
Helix 14	AB5	C	10	18	Right-handed alpha
Helix 15	AB6	C	285	289	Right-handed 310
Helix 16	AB7	C	379	382	Right-handed 310
Helix 17	AB8	C	418	422	Right-handed 310
Helix 18	AB9	C	447	458	Right-handed alpha
Helix 19	AC1	D	10	19	Right-handed alpha
Helix 20	AC2	D	191	195	Right-handed 310
Helix 21	AC3	D	285	289	Right-handed 310
Helix 22	AC4	D	377	381	Right-handed 310
Helix 23	AC5	D	418	422	Right-handed 310
Helix 24	AC6	D	447	456	Right-handed alpha

There are 32 sheets in PDB entry 8BWK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	26	29	parallel
Strand 3	A	51	55	parallel
Strand 4	A	76	79	parallel
Strand 5	A	107	109	parallel
Strand 6	A	136	138	parallel
Strand 7	A	167	169	parallel
Strand 8	A	202	204	parallel
Strand 9	A	226	228	parallel
Strand 10	A	248	250	parallel
Strand 11	A	273	275	parallel
Strand 12	A	312	314	parallel
Strand 13	A	341	344	parallel
Strand 14	A	365	368	parallel

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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	61	65	parallel
Strand 3	A	82	86	parallel
Strand 4	A	112	114	parallel
Strand 5	A	141	143	parallel
Strand 6	A	172	173	parallel
Strand 7	A	207	209	parallel
Strand 8	A	231	233	parallel
Strand 9	A	253	255	parallel
Strand 10	A	278	280	parallel
Strand 11	A	317	319	parallel
Strand 12	A	347	349	parallel
Strand 13	A	370	372	parallel
Strand 14	A	384	386	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	44	first strand
Strand 2	A	68	74	parallel
Strand 3	A	101	104	parallel
Strand 4	A	97	98	anti-parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	44	first strand
Strand 2	A	68	74	parallel
Strand 3	A	92	95	parallel
Strand 4	A	126	130	parallel
Strand 5	A	152	154	parallel
Strand 6	A	187	189	parallel
Strand 7	A	216	221	parallel
Strand 8	A	237	243	parallel
Strand 9	A	262	267	parallel
Strand 10	A	291	294	parallel
Strand 11	A	324	328	parallel
Strand 12	A	357	358	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	393	first strand
Strand 2	A	399	401	anti-parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	444	first strand
Strand 2	A	462	466	parallel
Strand 3	A	482	487	parallel
Strand 4	A	510	514	parallel
Strand 5	A	543	548	parallel
Strand 6	A	572	578	parallel
Strand 7	A	604	610	parallel
Strand 8	A	637	641	parallel
Strand 9	A	667	671	parallel
Strand 10	A	691	695	parallel
Strand 11	A	719	721	parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	473	first strand
Strand 2	A	493	497	parallel
Strand 3	A	517	519	parallel
Strand 4	A	551	555	parallel
Strand 5	A	581	585	parallel
Strand 6	A	613	617	parallel
Strand 7	A	644	648	parallel
Strand 8	A	674	676	parallel
Strand 9	A	698	700	parallel
Strand 10	A	724	726	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	479	first strand
Strand 2	A	503	505	parallel
Strand 3	A	530	534	parallel
Strand 4	A	562	565	parallel
Strand 5	A	590	592	parallel
Strand 6	A	622	625	parallel
Strand 7	A	660	663	parallel
Strand 8	A	681	685	parallel
Strand 9	A	706	709	parallel

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There are 14 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	8	first strand
Strand 2	B	26	29	parallel
Strand 3	B	51	55	parallel
Strand 4	B	76	79	parallel
Strand 5	B	107	109	parallel
Strand 6	B	136	138	parallel
Strand 7	B	167	169	parallel
Strand 8	B	202	204	parallel
Strand 9	B	226	228	parallel
Strand 10	B	248	250	parallel
Strand 11	B	273	275	parallel
Strand 12	B	312	314	parallel
Strand 13	B	341	344	parallel
Strand 14	B	365	368	parallel

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There are 14 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	61	65	parallel
Strand 3	B	82	86	parallel
Strand 4	B	112	114	parallel
Strand 5	B	141	143	parallel
Strand 6	B	172	173	parallel
Strand 7	B	207	209	parallel
Strand 8	B	231	233	parallel
Strand 9	B	253	255	parallel
Strand 10	B	278	280	parallel
Strand 11	B	317	319	parallel
Strand 12	B	347	349	parallel
Strand 13	B	370	372	parallel
Strand 14	B	384	386	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	44	first strand
Strand 2	B	68	74	parallel
Strand 3	B	101	104	parallel
Strand 4	B	97	98	anti-parallel

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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	44	first strand
Strand 2	B	68	74	parallel
Strand 3	B	92	95	parallel
Strand 4	B	126	130	parallel
Strand 5	B	152	154	parallel
Strand 6	B	187	189	parallel
Strand 7	B	216	221	parallel
Strand 8	B	237	243	parallel
Strand 9	B	262	267	parallel
Strand 10	B	291	294	parallel
Strand 11	B	324	328	parallel
Strand 12	B	356	358	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	393	first strand
Strand 2	B	399	401	anti-parallel

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There are 11 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	444	first strand
Strand 2	B	462	466	parallel
Strand 3	B	482	487	parallel
Strand 4	B	510	514	parallel
Strand 5	B	543	548	parallel
Strand 6	B	572	578	parallel
Strand 7	B	604	610	parallel
Strand 8	B	637	641	parallel
Strand 9	B	667	671	parallel
Strand 10	B	691	695	parallel
Strand 11	B	719	721	parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	473	first strand
Strand 2	B	493	497	parallel
Strand 3	B	517	519	parallel
Strand 4	B	551	555	parallel
Strand 5	B	581	585	parallel
Strand 6	B	613	617	parallel
Strand 7	B	644	648	parallel
Strand 8	B	674	676	parallel
Strand 9	B	698	700	parallel
Strand 10	B	724	726	parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	479	first strand
Strand 2	B	503	505	parallel
Strand 3	B	532	534	parallel
Strand 4	B	564	565	parallel
Strand 5	B	590	592	parallel
Strand 6	B	622	625	parallel
Strand 7	B	660	663	parallel
Strand 8	B	681	685	parallel
Strand 9	B	706	709	parallel

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There are 14 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	26	29	parallel
Strand 3	C	51	55	parallel
Strand 4	C	76	79	parallel
Strand 5	C	107	109	parallel
Strand 6	C	136	138	parallel
Strand 7	C	167	169	parallel
Strand 8	C	202	204	parallel
Strand 9	C	226	228	parallel
Strand 10	C	248	250	parallel
Strand 11	C	273	275	parallel
Strand 12	C	312	314	parallel
Strand 13	C	341	344	parallel
Strand 14	C	365	368	parallel

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There are 14 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	61	65	parallel
Strand 3	C	82	86	parallel
Strand 4	C	112	114	parallel
Strand 5	C	141	143	parallel
Strand 6	C	172	173	parallel
Strand 7	C	207	209	parallel
Strand 8	C	231	233	parallel
Strand 9	C	253	255	parallel
Strand 10	C	278	280	parallel
Strand 11	C	317	319	parallel
Strand 12	C	347	349	parallel
Strand 13	C	370	372	parallel
Strand 14	C	384	386	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	44	first strand
Strand 2	C	68	74	parallel
Strand 3	C	101	104	parallel
Strand 4	C	97	98	anti-parallel

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There are 12 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	44	first strand
Strand 2	C	68	74	parallel
Strand 3	C	92	95	parallel
Strand 4	C	126	130	parallel
Strand 5	C	152	154	parallel
Strand 6	C	187	189	parallel
Strand 7	C	216	221	parallel
Strand 8	C	237	243	parallel
Strand 9	C	262	267	parallel
Strand 10	C	291	294	parallel
Strand 11	C	324	328	parallel
Strand 12	C	356	358	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	393	first strand
Strand 2	C	399	401	anti-parallel

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There are 11 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	441	444	first strand
Strand 2	C	462	466	parallel
Strand 3	C	482	487	parallel
Strand 4	C	510	514	parallel
Strand 5	C	543	548	parallel
Strand 6	C	572	578	parallel
Strand 7	C	604	610	parallel
Strand 8	C	637	641	parallel
Strand 9	C	667	671	parallel
Strand 10	C	691	695	parallel
Strand 11	C	719	721	parallel

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There are 10 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	469	473	first strand
Strand 2	C	493	497	parallel
Strand 3	C	516	519	parallel
Strand 4	C	551	555	parallel
Strand 5	C	581	585	parallel
Strand 6	C	613	617	parallel
Strand 7	C	644	648	parallel
Strand 8	C	674	676	parallel
Strand 9	C	698	700	parallel
Strand 10	C	724	726	parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	479	first strand
Strand 2	C	503	505	parallel
Strand 3	C	532	534	parallel
Strand 4	C	564	565	parallel
Strand 5	C	590	592	parallel
Strand 6	C	622	625	parallel
Strand 7	C	660	663	parallel
Strand 8	C	681	685	parallel
Strand 9	C	706	709	parallel

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There are 14 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	26	29	parallel
Strand 3	D	51	55	parallel
Strand 4	D	76	79	parallel
Strand 5	D	107	109	parallel
Strand 6	D	136	138	parallel
Strand 7	D	167	169	parallel
Strand 8	D	202	204	parallel
Strand 9	D	226	228	parallel
Strand 10	D	248	250	parallel
Strand 11	D	273	275	parallel
Strand 12	D	312	314	parallel
Strand 13	D	341	344	parallel
Strand 14	D	365	368	parallel

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There are 14 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	35	first strand
Strand 2	D	61	65	parallel
Strand 3	D	82	86	parallel
Strand 4	D	112	114	parallel
Strand 5	D	141	143	parallel
Strand 6	D	172	173	parallel
Strand 7	D	207	209	parallel
Strand 8	D	231	233	parallel
Strand 9	D	253	255	parallel
Strand 10	D	278	280	parallel
Strand 11	D	317	319	parallel
Strand 12	D	347	349	parallel
Strand 13	D	370	372	parallel
Strand 14	D	384	386	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	44	first strand
Strand 2	D	68	74	parallel
Strand 3	D	101	104	parallel
Strand 4	D	97	98	anti-parallel

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There are 12 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	44	first strand
Strand 2	D	68	74	parallel
Strand 3	D	92	95	parallel
Strand 4	D	126	130	parallel
Strand 5	D	152	154	parallel
Strand 6	D	187	189	parallel
Strand 7	D	216	221	parallel
Strand 8	D	237	243	parallel
Strand 9	D	262	267	parallel
Strand 10	D	291	294	parallel
Strand 11	D	324	328	parallel
Strand 12	D	356	358	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	391	393	first strand
Strand 2	D	399	401	anti-parallel

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There are 10 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	462	464	first strand
Strand 2	D	482	486	parallel
Strand 3	D	510	514	parallel
Strand 4	D	543	548	parallel
Strand 5	D	572	578	parallel
Strand 6	D	606	610	parallel
Strand 7	D	637	641	parallel
Strand 8	D	667	671	parallel
Strand 9	D	691	695	parallel
Strand 10	D	719	721	parallel

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There are 9 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	477	479	first strand
Strand 2	D	503	505	parallel
Strand 3	D	532	534	parallel
Strand 4	D	564	565	parallel
Strand 5	D	590	592	parallel
Strand 6	D	622	625	parallel
Strand 7	D	660	663	parallel
Strand 8	D	681	685	parallel
Strand 9	D	706	709	parallel

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There are 8 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	495	496	first strand
Strand 2	D	517	519	parallel
Strand 3	D	551	555	parallel
Strand 4	D	581	585	parallel
Strand 5	D	613	617	parallel
Strand 6	D	644	648	parallel
Strand 7	D	674	676	parallel
Strand 8	D	698	700	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BWK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BWK